Project name: seed4

Status: done

Started: 2026-03-03 09:05:41
Settings
Chain sequence(s) A: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
B: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:14:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:15:02)
Show buried residues

Minimal score value
-3.7345
Maximal score value
1.7715
Average score
-0.7159
Total score value
-463.9134

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.1934
2 A A -0.6337
3 S A -0.4567
4 C A 0.1354
5 E A -0.7755
6 Y A 0.6641
7 S A 0.3308
8 A A 0.2549
9 S A 0.0000
10 H A 0.0000
11 K A 0.0000
12 Q A 0.0000
13 D A 0.4188
14 L A 0.0000
15 L A 1.4063
16 L A 1.1839
17 G A -0.2319
18 S A -0.3172
19 T A -0.6553
20 G A -0.2014
21 S A -0.0454
22 I A 0.0000
23 S A -0.2778
24 C A 0.0000
25 P A 0.0000
26 S A -0.1567
27 L A 0.0000
28 S A -0.0388
29 C A 0.3375
30 Q A -0.6847
31 S A -1.3320
32 D A -2.1188
33 A A -1.6265
34 Q A -1.9800
35 S A 0.0000
36 P A -0.8592
37 A A -0.6282
38 V A 0.0000
39 T A 0.0000
40 W A 0.0000
41 Y A 0.0000
42 K A -0.7575
43 N A -1.4135
44 G A -1.1973
45 K A -0.7956
46 L A 0.0640
47 L A 0.2963
48 S A 0.0628
49 V A 0.0000
50 E A -0.8214
51 R A -1.5132
52 S A -1.4131
53 N A 0.0000
54 R A -1.1156
55 I A 0.0000
56 V A 0.7501
57 V A 0.0000
58 D A -1.8218
59 E A -1.3830
60 V A 0.0000
61 Y A 0.3888
62 D A -0.3382
63 Y A 0.5868
64 H A -0.1381
65 Q A -0.3979
66 G A -0.6100
67 T A -0.6664
68 Y A 0.0000
69 V A 0.0000
70 C A 0.0000
71 D A 0.0000
72 Y A 0.0000
73 T A -0.3654
74 Q A -0.5924
75 S A -0.3175
76 D A 0.0000
77 T A 0.0000
78 V A 0.1092
79 S A 0.0000
80 S A 0.0000
81 W A 0.0000
82 T A -0.4757
83 V A 0.0000
84 R A -1.3692
85 A A 0.0000
86 V A -0.2607
87 V A 0.0000
88 Q A -0.4166
89 V A 0.0000
90 R A -0.3869
91 T A 0.6947
92 I A 1.7715
93 V A 1.5257
94 G A -0.1093
95 D A -2.0960
96 T A -2.2257
97 K A -3.4153
98 D A -3.7345
99 K A -3.3639
100 T A -1.9702
101 H A -1.6423
102 T A -0.5797
103 C A 0.1260
104 P A -0.2586
105 P A 0.1082
106 C A 0.4800
107 P A -0.3122
108 A A -0.5658
109 P A -1.1619
110 E A -2.1422
111 A A -1.0666
112 A A -0.9246
113 G A -0.8676
114 G A -0.9910
115 P A 0.0000
116 S A -0.4352
117 V A 0.0000
118 F A -0.0187
119 L A 0.0000
120 F A 0.0000
121 P A 0.0000
122 P A 0.0000
123 K A -1.6307
124 P A -0.9489
125 K A -0.8853
126 D A 0.0000
127 T A 0.0000
128 L A 0.0000
129 M A 0.3725
130 I A 1.3876
131 S A 0.1938
132 R A -0.8010
133 T A -0.4396
134 P A 0.0000
135 E A -0.6863
136 V A 0.0000
137 T A -0.2580
138 C A 0.0000
139 V A 0.0000
140 V A 0.0000
141 V A 0.0000
142 D A -1.0149
143 V A 0.0000
144 S A -2.2131
145 H A -2.6144
146 E A -2.9769
147 D A -2.6045
148 P A -2.5910
149 E A -3.0891
150 V A -1.9643
151 K A -2.2516
152 F A -1.3002
153 N A -1.0774
154 W A 0.0000
155 Y A -0.7664
156 V A -1.0978
157 D A -2.3673
158 G A -1.0105
159 V A 0.5166
160 E A -0.6522
161 V A -0.5141
162 H A -1.8367
163 N A -2.1212
164 A A -1.7249
165 K A -2.2059
166 T A -1.8137
167 K A -1.9373
168 P A -1.8610
169 R A -2.5355
170 E A -1.8215
171 E A -2.4994
172 Q A 0.0000
173 Y A -0.4397
174 N A -1.2118
175 S A -1.1047
176 T A -1.6641
177 Y A 0.0000
178 R A 0.0000
179 V A 0.0000
180 V A 0.0000
181 S A 0.0000
182 V A 0.0000
183 L A 0.0000
184 T A -0.4417
185 V A 0.0000
186 L A 0.7479
187 H A 0.0000
188 Q A -1.0203
189 D A -1.4076
190 W A 0.0000
191 L A -0.9790
192 N A -2.1325
193 G A -2.2766
194 K A -2.4353
195 E A -2.6692
196 Y A 0.0000
197 K A -1.5651
198 C A 0.0000
199 K A -1.1745
200 V A 0.0000
201 S A -1.4199
202 N A 0.0000
203 K A -2.5723
204 A A -1.4326
205 L A -0.8822
206 G A -0.9011
207 A A -0.6600
208 P A -0.7783
209 I A -0.5505
210 E A -1.1603
211 K A -0.9091
212 T A -1.0402
213 I A -0.5009
214 S A -1.4179
215 K A 0.0000
216 A A 0.0000
217 K A -2.3125
218 G A -1.9347
219 Q A -2.1189
220 P A -1.6933
221 R A -1.9728
222 E A -2.5317
223 P A 0.0000
224 Q A -1.1602
225 V A 0.0000
226 Y A 0.0000
227 T A -0.7643
228 L A 0.0000
229 P A -0.3925
230 P A -0.8559
231 S A 0.0000
232 R A -2.6508
233 D A -2.7630
234 E A 0.0000
235 L A -1.7452
236 T A -1.4833
237 K A -1.9787
238 N A -2.3220
239 Q A -2.0716
240 V A 0.0000
241 S A 0.0000
242 L A 0.0000
243 T A 0.0000
244 C A 0.0000
245 L A 0.0000
246 V A 0.0000
247 K A -0.6260
248 G A -1.1282
249 F A 0.0000
250 Y A -1.0516
251 P A 0.0000
252 S A 0.0000
253 D A 0.0000
254 I A 0.0000
255 A A -0.4071
256 V A 0.0000
257 E A -1.1752
258 W A 0.0000
259 E A -1.6562
260 S A 0.0000
261 N A -1.8629
262 G A -1.7438
263 Q A -2.2275
264 P A -1.8338
265 E A 0.0000
266 N A -2.0103
267 N A -1.2396
268 Y A -0.7392
269 K A 0.0000
270 T A -0.2314
271 T A 0.0000
272 P A -0.0483
273 P A 0.0261
274 V A 0.0419
275 L A -0.4230
276 D A -0.9301
277 S A -1.5118
278 D A -1.9956
279 G A -1.2092
280 S A 0.0000
281 F A 0.0000
282 F A 0.0000
283 L A 0.0000
284 Y A 0.0000
285 S A 0.0000
286 K A 0.0000
287 L A 0.0000
288 T A -0.6929
289 V A 0.0000
290 D A -2.2970
291 K A -2.4520
292 S A -2.1527
293 R A -1.9868
294 W A 0.0000
295 Q A -2.3588
296 Q A -2.1839
297 G A -1.2876
298 N A -0.9189
299 V A 0.0112
300 F A 0.0000
301 S A 0.0000
302 C A 0.0000
303 S A 0.0000
304 V A 0.0000
305 M A 0.0000
306 H A 0.0000
307 E A -1.0163
308 A A -1.4965
309 L A -1.3784
310 H A -1.7370
311 N A -1.4225
312 H A -0.9094
313 Y A -0.3314
314 T A -0.5751
315 Q A -0.8904
316 K A -0.9520
317 S A -0.4912
318 L A 0.0000
319 S A -0.2287
320 L A -0.3936
321 S A -0.6396
322 P A -1.2532
323 G A -1.4228
324 K A -2.0341
1 N B -1.2010
2 A B -0.6717
3 S B -0.4979
4 C B 0.0971
5 E B -0.8152
6 Y B 0.6375
7 S B 0.2948
8 A B 0.1465
9 S B -0.2411
10 H B 0.0000
11 K B 0.0000
12 Q B 0.0000
13 D B -0.1002
14 L B 0.0000
15 L B 0.9283
16 L B 0.7984
17 G B -0.3565
18 S B -0.4078
19 T B -0.6995
20 G B -0.1822
21 S B 0.1038
22 I B 0.0000
23 S B -0.0351
24 C B 0.0000
25 P B 0.0000
26 S B -0.0301
27 L B 0.0000
28 S B 0.0316
29 C B 0.4153
30 Q B -0.5346
31 S B -1.1896
32 D B -1.8103
33 A B -1.5800
34 Q B -1.9857
35 S B 0.0000
36 P B -0.7010
37 A B -0.5006
38 V B 0.0000
39 T B -0.0353
40 W B 0.0000
41 Y B 0.0000
42 K B -1.4809
43 N B -2.1618
44 G B -1.9939
45 K B -2.1586
46 L B -0.6801
47 L B -0.0844
48 S B 0.0301
49 V B 0.0000
50 E B -0.5194
51 R B -1.0472
52 S B -0.9123
53 N B 0.0000
54 R B -0.4585
55 I B 0.0000
56 V B 0.9257
57 V B 0.0000
58 D B -1.8013
59 E B -1.3839
60 V B 0.0000
61 Y B 0.2378
62 D B -0.7337
63 Y B 0.3479
64 H B -0.4718
65 Q B -1.3537
66 G B -1.1618
67 T B -1.1197
68 Y B 0.0000
69 V B -0.2473
70 C B 0.0000
71 D B 0.0000
72 Y B 0.0000
73 T B -0.1889
74 Q B -0.4520
75 S B -0.3086
76 D B 0.0000
77 T B 0.0000
78 V B -0.2186
79 S B 0.0000
80 S B -0.0082
81 W B 0.0000
82 T B 0.0000
83 V B 0.0000
84 R B -0.2692
85 A B 0.0000
86 V B 0.1946
87 V B 0.0000
88 Q B -0.8649
89 V B 0.0000
90 R B -1.3519
91 T B -0.0457
92 I B 1.0381
93 V B 1.2441
94 G B -0.1454
95 D B -2.1594
96 T B -2.2170
97 K B -3.4088
98 D B -3.7095
99 K B -3.3448
100 T B -1.9422
101 H B -1.6186
102 T B -0.5535
103 C B 0.3361
104 P B -0.0342
105 P B 0.1052
106 C B 0.5042
107 P B -0.3063
108 A B -0.5424
109 P B -1.0811
110 E B -1.9994
111 A B -1.0475
112 A B -0.8866
113 G B -0.8095
114 G B -0.8923
115 P B 0.0000
116 S B -0.3631
117 V B 0.0000
118 F B -0.3640
119 L B 0.0000
120 F B -0.0688
121 P B 0.0000
122 P B 0.0000
123 K B -1.8252
124 P B 0.0000
125 K B -0.9878
126 D B -1.2003
127 T B 0.0000
128 L B 0.0000
129 M B 0.2776
130 I B 1.2974
131 S B 0.1002
132 R B -1.0454
133 T B -0.6932
134 P B 0.0000
135 E B -1.1771
136 V B 0.0000
137 T B -0.2649
138 C B 0.0000
139 V B 0.0000
140 V B 0.0000
141 V B 0.0000
142 D B -0.8381
143 V B 0.0000
144 S B -1.9608
145 H B -2.5967
146 E B -2.9748
147 D B -2.6019
148 P B -2.5840
149 E B -3.0951
150 V B -1.9703
151 K B -2.2538
152 F B -1.4023
153 N B -1.1800
154 W B 0.0000
155 Y B -0.8025
156 V B -1.0344
157 D B -2.2664
158 G B -0.9818
159 V B 0.4995
160 E B -0.7397
161 V B -0.5740
162 H B -1.8962
163 N B -2.1716
164 A B -1.8816
165 K B -2.4624
166 T B -2.0358
167 K B -2.2783
168 P B -2.0628
169 R B -2.6713
170 E B -1.8336
171 E B -2.3296
172 Q B 0.0000
173 Y B 0.3929
174 N B -0.5576
175 S B -0.7958
176 T B -1.4109
177 Y B 0.0000
178 R B 0.0000
179 V B 0.0000
180 V B 0.0000
181 S B 0.0000
182 V B -1.0282
183 L B 0.0000
184 T B -0.6532
185 V B 0.0000
186 L B 0.6780
187 H B 0.0000
188 Q B -1.0891
189 D B -1.3504
190 W B 0.0000
191 L B -0.9250
192 N B -2.0413
193 G B -2.0621
194 K B -2.2238
195 E B -2.3811
196 Y B 0.0000
197 K B -1.6957
198 C B 0.0000
199 K B -1.5733
200 V B 0.0000
201 S B -1.5446
202 N B 0.0000
203 K B -2.5664
204 A B -1.4242
205 L B -0.8661
206 G B -0.8881
207 A B -0.7390
208 P B -1.0579
209 I B -1.1136
210 E B -2.0460
211 K B -1.6220
212 T B -1.4321
213 I B -0.6727
214 S B -1.2156
215 K B 0.0000
216 A B 0.0000
217 K B -2.2492
218 G B -1.9024
219 Q B -2.1289
220 P B -1.7167
221 R B -2.0179
222 E B -2.5774
223 P B 0.0000
224 Q B -1.1520
225 V B 0.0000
226 Y B 0.0000
227 T B -0.7762
228 L B 0.0000
229 P B -0.4049
230 P B -0.8850
231 S B 0.0000
232 R B -2.6727
233 D B -2.8124
234 E B 0.0000
235 L B -1.8732
236 T B -1.6049
237 K B -2.1686
238 N B -2.4073
239 Q B -2.1586
240 V B 0.0000
241 S B 0.0000
242 L B 0.0000
243 T B 0.0000
244 C B 0.0000
245 L B 0.0000
246 V B 0.0000
247 K B -0.6460
248 G B -1.1516
249 F B 0.0000
250 Y B -1.0216
251 P B 0.0000
252 S B 0.0000
253 D B 0.0000
254 I B 0.0000
255 A B -0.4393
256 V B 0.0000
257 E B -1.1494
258 W B 0.0000
259 E B -1.7571
260 S B 0.0000
261 N B -1.8819
262 G B -1.7727
263 Q B -2.2822
264 P B -1.9575
265 E B -1.8472
266 N B -2.1448
267 N B -1.3800
268 Y B -0.8282
269 K B -0.6409
270 T B -0.1604
271 T B 0.0000
272 P B -0.1006
273 P B 0.0000
274 V B 0.0000
275 L B -0.4792
276 D B -1.0131
277 S B -1.4634
278 D B -2.0725
279 G B -1.2761
280 S B 0.0000
281 F B 0.0000
282 F B 0.0000
283 L B 0.0000
284 Y B 0.0000
285 S B 0.0000
286 K B 0.0000
287 L B 0.0000
288 T B -0.7349
289 V B 0.0000
290 D B -2.1460
291 K B -2.3788
292 S B -2.0546
293 R B -1.8579
294 W B 0.0000
295 Q B -2.3084
296 Q B -2.1452
297 G B -1.2593
298 N B -0.8558
299 V B 0.0207
300 F B 0.0000
301 S B 0.0000
302 C B 0.0000
303 S B 0.0000
304 V B 0.0000
305 M B 0.0000
306 H B 0.0000
307 E B -0.9878
308 A B -1.5556
309 L B 0.0000
310 H B -1.8239
311 N B -1.4767
312 H B -0.9821
313 Y B -0.4507
314 T B 0.0000
315 Q B -0.9484
316 K B -1.0032
317 S B -0.5223
318 L B 0.0000
319 S B -0.2440
320 L B -0.4457
321 S B -0.6730
322 P B -1.2697
323 G B -1.4336
324 K B -2.0345
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Laboratory of Theory of Biopolymers 2018