Project name: shread2

Status: done

Started: 2026-02-09 08:06:00
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Chain sequence(s) A: MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMVILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFMCEYADEKTATIVEFLNRWITFCQSIISTLT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:31)
Show buried residues

Minimal score value
-3.6019
Maximal score value
3.0201
Average score
-0.5512
Total score value
-85.4314

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.3438
2 Y A 0.9863
3 R A -0.5379
4 M A 0.3737
5 Q A 0.0409
6 L A 1.5953
7 L A 2.0439
8 S A 1.2718
9 C A 2.3306
10 I A 3.0201
11 A A 2.0376
12 L A 2.2044
13 S A 1.2193
14 L A 2.0219
15 A A 1.6839
16 L A 2.4570
17 V A 2.3078
18 T A 0.4592
19 N A -0.9989
20 S A -0.6550
21 A A -0.3047
22 P A -0.2633
23 T A -0.4143
24 S A -0.2718
25 S A -0.9098
26 S A -1.3637
27 T A -1.4697
28 K A -2.4903
29 K A -2.5757
30 T A -1.7175
31 Q A -1.2933
32 L A -0.8220
33 Q A -1.0442
34 L A 0.0000
35 E A -0.9756
36 H A -0.6314
37 L A 0.0000
38 L A 0.0000
39 L A 0.7401
40 D A 0.2773
41 L A 0.0000
42 Q A 0.3195
43 M A 0.8616
44 V A 0.7513
45 I A 0.0000
46 L A -0.2556
47 N A -0.6027
48 G A -0.3709
49 I A 0.0000
50 N A -1.4608
51 N A -1.5299
52 Y A -0.5348
53 K A -1.5563
54 N A 0.0000
55 P A -0.9204
56 K A -1.1712
57 L A -0.6546
58 T A -0.7316
59 R A -1.6541
60 M A 0.0000
61 L A -0.2381
62 T A -0.3881
63 F A -0.4858
64 K A -1.5782
65 F A 0.0000
66 Y A -0.8266
67 M A 0.0000
68 P A 0.0000
69 K A -3.3810
70 K A -2.8498
71 A A -1.8307
72 T A -1.0753
73 E A -1.0099
74 L A -0.4888
75 K A -0.8239
76 H A 0.0000
77 L A 0.0000
78 Q A -0.8593
79 C A 0.0000
80 L A 0.0000
81 E A -1.0481
82 E A -1.9251
83 E A 0.0000
84 L A 0.0000
85 K A -3.0346
86 P A -2.0833
87 L A 0.0000
88 E A -2.9460
89 E A -2.9213
90 V A 0.0000
91 L A 0.0000
92 N A -1.9480
93 L A 0.0000
94 A A -1.2675
95 Q A -1.7084
96 S A -1.6180
97 K A -2.1428
98 N A -1.3462
99 F A 0.6158
100 H A -0.3054
101 L A 0.0246
102 R A 0.0000
103 P A -1.6220
104 R A -3.6019
105 D A -3.0193
106 L A 0.0000
107 I A 0.0000
108 S A -1.6078
109 N A -1.4848
110 I A 0.0000
111 N A -0.4548
112 V A 0.9506
113 I A 0.2227
114 V A 0.0000
115 L A 0.2640
116 E A -0.9440
117 L A -0.6654
118 K A 0.0000
119 G A -1.2392
120 S A 0.0000
121 E A -1.7168
122 T A -0.8327
123 T A -0.1787
124 F A -0.0681
125 M A 0.4213
126 C A -1.0017
127 E A -2.0044
128 Y A -1.7702
129 A A -2.6690
130 D A -3.0764
131 E A -3.1251
132 K A -2.2599
133 T A -1.6701
134 A A 0.0000
135 T A -0.8193
136 I A 0.0000
137 V A -0.9137
138 E A -2.2822
139 F A 0.0000
140 L A 0.0000
141 N A -1.7896
142 R A -1.8460
143 W A 0.0000
144 I A -0.7734
145 T A -0.9937
146 F A 0.0000
147 C A 0.0000
148 Q A -1.3889
149 S A -0.8343
150 I A 0.0000
151 I A -0.4436
152 S A -0.4630
153 T A -0.1690
154 L A -0.0328
155 T A -0.2037
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Laboratory of Theory of Biopolymers 2018