Project name: RSVAseq35

Status: done

Started: 2026-06-14 09:56:30
Settings
Chain sequence(s) A: QYQLVESGGGLVQPGGSLRLSCAASGFTFSNYAMGWFRQAPGQGLEAVAAISSGGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDGSGWGRVYGYNYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-2.9447
Maximal score value
1.7724
Average score
-0.5323
Total score value
-64.9353

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2217
2 Y A -0.3398
3 Q A -0.6843
4 L A 0.0000
5 V A 1.2237
6 E A 0.0000
7 S A -0.1409
8 G A -0.6306
9 G A 0.1479
10 G A 0.6733
11 L A 1.3923
12 V A -0.1130
13 Q A -1.4454
14 P A -1.8051
15 G A -1.5382
16 G A -1.0072
17 S A -1.2795
18 L A -0.8922
19 R A -2.1252
20 L A 0.0000
21 S A -0.3474
22 C A 0.0000
23 A A -0.1244
24 A A 0.0000
25 S A -0.7694
26 G A -0.7748
27 F A -0.4591
28 T A -0.5829
29 F A 0.0000
30 S A -1.2943
31 N A -1.4767
32 Y A -0.6090
33 A A 0.0000
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -0.4267
40 A A -0.8422
41 P A -0.9622
42 G A -1.2209
43 Q A -1.6773
44 G A -0.8914
45 L A 0.2727
46 E A -0.4244
47 A A 0.2580
48 V A 0.0000
49 A A 0.0000
50 A A -0.0135
51 I A 0.0000
52 S A -0.7546
53 S A -0.9292
54 G A -1.1133
55 G A -0.9570
56 G A -0.8356
57 S A -0.5475
58 T A -0.0338
59 Y A 0.2223
60 Y A -0.5875
61 A A 0.0000
62 D A -2.4163
63 S A -1.8095
64 V A 0.0000
65 K A -2.5421
66 G A -1.7599
67 R A -1.7151
68 F A 0.0000
69 T A -0.7771
70 I A 0.0000
71 S A -0.3974
72 R A -1.2205
73 D A -1.8831
74 N A -2.3162
75 S A -1.8350
76 K A -2.6075
77 N A -2.0943
78 T A 0.0000
79 L A 0.0000
80 Y A -0.6139
81 L A 0.0000
82 Q A -1.2468
83 M A 0.0000
84 N A -1.5019
85 S A -1.4178
86 L A 0.0000
87 R A -2.9447
88 A A -2.0248
89 E A -2.4547
90 D A 0.0000
91 T A -0.4874
92 A A 0.0000
93 V A 0.9683
94 Y A 0.0000
95 Y A 0.5323
96 C A 0.0000
97 A A 0.0000
98 K A 0.0000
99 D A 0.0000
100 G A -0.8215
101 S A -0.7973
102 G A -0.5462
103 W A 0.2231
104 G A -0.5985
105 R A -1.1921
106 V A 0.3537
107 Y A 0.5992
108 G A -0.2998
109 Y A -0.3466
110 N A -0.8510
111 Y A 0.0943
112 W A 0.3866
113 G A 0.1563
114 Q A -0.7850
115 G A 0.2037
116 T A 0.7072
117 L A 1.7724
118 V A 0.0000
119 T A 0.3249
120 V A 0.0000
121 S A -0.7630
122 S A -0.5023
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Laboratory of Theory of Biopolymers 2018