Project name: Npl3 RRM 2.2

Status: done

Started: 2025-12-31 06:24:42
Settings
Chain sequence(s) A: KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPPPIR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-4.1846
Maximal score value
0.9021
Average score
-1.4141
Total score value
-123.0303

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
80 K A -0.9972
81 L A 0.4046
82 P A -0.6499
83 A A -2.0917
84 K A -2.9807
85 R A -3.5705
86 Y A -2.2028
87 R A -2.1764
88 I A 0.0000
89 T A -1.6816
90 M A 0.0000
91 K A -1.9611
92 N A -1.5426
93 L A -1.1646
94 P A -1.3062
95 E A -1.3964
96 G A -0.8579
97 C A 0.0000
98 S A -0.8326
99 W A -0.0448
100 Q A -1.5222
101 D A -2.1523
102 L A 0.0000
103 K A -2.5408
104 D A -3.4042
105 L A -2.4504
106 A A 0.0000
107 R A -4.1846
108 E A -3.5461
109 N A -2.5513
110 S A -2.0988
111 L A 0.0000
112 E A -3.0241
113 T A 0.0000
114 T A -0.1958
115 F A 0.6272
116 S A 0.4284
117 S A 0.1598
118 V A -0.4008
119 N A -2.0295
120 T A -1.9540
121 R A -2.5844
122 D A -1.9808
123 F A -0.4205
124 D A -2.1936
125 G A -1.8323
126 T A -1.4082
127 G A 0.0000
128 A A -0.6661
129 L A 0.0000
130 E A -1.1576
131 F A 0.0000
132 P A -1.1928
133 S A -1.8059
134 E A -3.0387
135 E A -2.7185
136 I A -2.4450
137 L A 0.0000
138 V A -2.3060
139 E A -3.4115
140 A A 0.0000
141 L A 0.0000
142 E A -3.6979
143 R A -3.5056
144 L A 0.0000
145 N A -2.9210
146 N A -2.1325
147 I A -1.0283
148 E A -1.1960
149 F A -0.1072
150 R A -1.5556
151 G A -0.9825
152 S A -0.7395
153 V A -0.3434
154 I A 0.0000
155 T A -1.9178
156 V A 0.0000
157 E A -3.1170
158 R A -3.6508
159 D A -3.2548
160 D A -2.8523
161 N A -2.5600
162 P A -1.4858
163 P A -0.6659
164 P A -0.1834
165 I A 0.9021
166 R A -0.9813
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Laboratory of Theory of Biopolymers 2018