| Chain sequence(s) |
H: QVQLQQSGGELAKPGASVKVSCKASGYTFSSFWMHWVRQAPGQGLEWIGYINPRSGYTEYNEIFRDKATMTTDTSTSTAYMELSSLRSEDTAVYYCASFLGRGAMDYWGQGTTVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQDISNYLAWYQQKPGKAPKLLIYYTSKIHSGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQGNTFPYTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:59)
[INFO] Main: Simulation completed successfully. (00:02:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.2090 | |
| 2 | V | H | -0.2834 | |
| 3 | Q | H | -1.1613 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.1983 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.1360 | |
| 8 | G | H | -0.5612 | |
| 9 | G | H | -0.6248 | |
| 11 | E | H | -0.1651 | |
| 12 | L | H | 1.4825 | |
| 13 | A | H | -0.0200 | |
| 14 | K | H | -1.7293 | |
| 15 | P | H | -0.5005 | |
| 16 | G | H | -0.5127 | |
| 17 | A | H | -0.1104 | |
| 18 | S | H | -0.1813 | |
| 19 | V | H | -0.1270 | |
| 20 | K | H | -1.7696 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.0071 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.1561 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.2013 | |
| 27 | G | H | -0.5470 | |
| 28 | Y | H | 0.1249 | |
| 29 | T | H | -0.0309 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.3054 | |
| 36 | S | H | -0.0505 | |
| 37 | F | H | 0.5817 | |
| 38 | W | H | 0.4721 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | -0.2589 | |
| 44 | Q | H | -0.1701 | |
| 45 | A | H | 0.0000 | |
| 46 | P | H | -0.3390 | |
| 47 | G | H | -0.7265 | |
| 48 | Q | H | -1.2995 | |
| 49 | G | H | -0.3167 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.3902 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.1781 | |
| 58 | P | H | 0.0000 | |
| 59 | R | H | -1.8894 | |
| 62 | S | H | -0.6241 | |
| 63 | G | H | -0.2448 | |
| 64 | Y | H | 1.2328 | |
| 65 | T | H | 0.1241 | |
| 66 | E | H | -0.4777 | |
| 67 | Y | H | 0.1480 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -1.4621 | |
| 70 | I | H | 1.6890 | |
| 71 | F | H | 0.0000 | |
| 72 | R | H | -2.1652 | |
| 74 | D | H | -2.1574 | |
| 75 | K | H | -0.5278 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.0588 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.0323 | |
| 80 | T | H | -0.1047 | |
| 81 | D | H | -0.4888 | |
| 82 | T | H | -0.2000 | |
| 83 | S | H | -0.2364 | |
| 84 | T | H | -0.1062 | |
| 85 | S | H | -0.0626 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | 0.2585 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -0.9798 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.1345 | |
| 93 | S | H | -0.2867 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -1.5281 | |
| 96 | S | H | -0.8089 | |
| 97 | E | H | -1.8579 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.0206 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.4197 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | S | H | 0.0000 | |
| 107 | F | H | 0.0000 | |
| 108 | L | H | 0.9655 | |
| 109 | G | H | -0.6016 | |
| 110 | R | H | -1.9246 | |
| 113 | G | H | 0.0000 | |
| 114 | A | H | 0.0070 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | 0.0000 | |
| 117 | Y | H | 0.3933 | |
| 118 | W | H | 0.1914 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.0449 | |
| 121 | G | H | -0.2371 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.0451 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1341 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.3125 | |
| 128 | S | H | -0.2316 | |
| 1 | D | L | -1.7894 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -1.1983 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.0694 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.1573 | |
| 8 | P | L | -0.2038 | |
| 9 | S | L | -0.2702 | |
| 10 | S | L | -0.3537 | |
| 11 | L | L | 0.1665 | |
| 12 | S | L | -0.3591 | |
| 13 | A | L | -0.0395 | |
| 14 | S | L | 0.0663 | |
| 15 | V | L | 1.6612 | |
| 16 | G | L | -0.2228 | |
| 17 | D | L | -1.2457 | |
| 18 | R | L | -2.0129 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.0636 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.0381 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -1.9492 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.3669 | |
| 27 | Q | L | -1.1842 | |
| 28 | D | L | -1.7142 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.1749 | |
| 37 | N | L | -0.2357 | |
| 38 | Y | L | 0.2855 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.1975 | |
| 45 | K | L | -0.4736 | |
| 46 | P | L | -0.4116 | |
| 47 | G | L | -0.8138 | |
| 48 | K | L | -1.7806 | |
| 49 | A | L | -0.3001 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.7945 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.6381 | |
| 56 | Y | L | 0.6850 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.4166 | |
| 66 | K | L | -1.1523 | |
| 67 | I | L | 0.5068 | |
| 68 | H | L | -0.0042 | |
| 69 | S | L | -0.3156 | |
| 70 | G | L | -0.4723 | |
| 71 | V | L | 0.0704 | |
| 72 | P | L | -0.1558 | |
| 74 | S | L | -0.2810 | |
| 75 | R | L | -0.2677 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.1541 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.2535 | |
| 80 | G | L | -0.3022 | |
| 83 | S | L | -0.2747 | |
| 84 | G | L | -0.3654 | |
| 85 | T | L | -0.3806 | |
| 86 | D | L | -1.1060 | |
| 87 | Y | L | 0.0000 | |
| 88 | T | L | -0.0217 | |
| 89 | F | L | 0.0000 | |
| 90 | T | L | -0.0209 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -0.2960 | |
| 93 | S | L | -0.4448 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.7660 | |
| 96 | P | L | -0.6782 | |
| 97 | E | L | -1.8598 | |
| 98 | D | L | 0.0000 | |
| 99 | I | L | 1.0827 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.1922 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | G | L | -0.1545 | |
| 108 | N | L | -0.5683 | |
| 109 | T | L | 0.0126 | |
| 114 | F | L | 0.7571 | |
| 115 | P | L | 0.1844 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | -0.0117 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -0.9986 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.2454 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.6003 | |
| 126 | I | L | -0.0303 | |
| 127 | K | L | -1.5985 |