Project name: query_structure

Status: done

Started: 2026-03-16 23:47:38
Settings
Chain sequence(s) A: GYCAEKGIRCDDIHCCTGLKCKCNASGYNCVCRKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:33)
Show buried residues

Minimal score value
-4.3903
Maximal score value
0.8786
Average score
-1.5834
Total score value
-55.4183

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.2372
2 Y A 0.8786
3 C A -0.1730
4 A A 0.0000
5 E A -2.9643
6 K A -3.3811
7 G A -2.1821
8 I A -1.1790
9 R A -2.5934
10 C A 0.0000
11 D A -2.9989
12 D A -3.0296
13 I A -1.4248
14 H A -1.8277
15 C A -2.2297
16 C A -1.2991
17 T A -0.9720
18 G A -2.1525
19 L A 0.0000
20 K A -3.6678
21 C A -2.4006
22 K A -2.3439
23 C A -1.1382
24 N A -1.1748
25 A A -0.6616
26 S A -0.4912
27 G A -0.5711
28 Y A 0.0048
29 N A -1.2491
30 C A -1.1275
31 V A -1.3634
32 C A 0.0000
33 R A -3.9334
34 K A -4.3903
35 K A -3.6188
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Laboratory of Theory of Biopolymers 2018