Project name: 5NHR

Status: done

Started: 2026-03-23 04:50:36
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSSYINWVRQAPGQGLEWMGTINPVSGSTSYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGGWFDYWGQGTLVTVSS
C: RECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHL
B: SALTQPASVSGSPGQSITISCTGTSSDVGSYNYVNWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCGTFAGGSYYGVFGGGTKLTVLWSHP
D: RECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLP
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSSYINWVRQAPGQGLEWMGTINPVSGSTSYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGGWFDYWGQGTLVTVSS
L: SALTQPASVSGSPGQSITISCTGTSSDVGSYNYVNWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCGTFAGGSYYGVFGGGTKLTVLW
input PDB
Selected Chain(s) A,C,B,D,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:36)
Show buried residues

Minimal score value
-3.8514
Maximal score value
1.845
Average score
-0.6812
Total score value
-433.2675

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 S L -0.1917
3 A L -0.0851
4 L L 0.0000
5 T L -0.2728
6 Q L 0.0000
7 P L -0.4591
8 A L -0.5917
9 S L -0.8305
10 V L -0.2891
11 S L -0.1968
12 G L 0.0000
13 S L -0.0520
14 P L -0.3590
15 G L -1.3433
16 Q L -1.6900
17 S L -1.1193
18 I L 0.0000
19 T L -0.1339
20 I L 0.0000
21 S L -0.2501
22 C L 0.0000
23 T L -0.4292
24 G L -0.4510
25 T L -0.5631
26 S L -0.6670
27 S L -0.4689
28 D L 0.0000
29 V L 0.0000
30 G L -0.9887
31 S L -0.5920
32 Y L -0.3448
33 N L -1.1811
34 Y L 0.0000
35 V L 0.0000
36 N L 0.0000
37 W L 0.0000
38 Y L 0.0000
39 Q L 0.0000
40 Q L 0.0000
41 H L -1.8255
42 P L -1.3565
43 G L -1.6531
44 K L -2.4686
45 A L -1.5524
46 P L 0.0000
47 K L -1.2708
48 L L 0.0000
49 M L 0.0000
50 I L 0.0000
51 Y L 0.0000
52 G L 0.0000
53 V L 0.0000
54 S L -1.1932
55 K L -1.7641
56 R L -1.9525
57 P L -1.5640
58 S L -1.4931
59 G L -0.8863
60 V L -0.8150
61 S L -1.0105
62 N L -1.6855
63 R L -1.1088
64 F L 0.0000
65 S L -0.9699
66 G L -0.7208
67 S L -0.8646
68 K L -1.1124
69 S L -0.8487
70 G L -1.0257
71 N L -0.9776
72 T L -0.7140
73 A L 0.0000
74 S L -0.3762
75 L L 0.0000
76 T L -0.3193
77 I L 0.0000
78 S L -1.1239
79 G L -1.1379
80 L L 0.0000
81 Q L -1.3424
82 A L -0.9324
83 E L -2.3531
84 D L 0.0000
85 E L -1.9969
86 A L 0.0000
87 D L -1.3856
88 Y L 0.0000
89 Y L 0.0000
90 C L 0.0000
91 G L 0.0000
92 T L 0.0000
93 F L 0.0000
94 A L 0.0000
95 G L 0.0000
96 G L -0.2780
97 S L -0.1345
98 Y L 0.6215
99 Y L 1.3709
100 G L 0.7375
101 V L 0.4629
102 F L 0.0000
103 G L 0.0000
104 G L -0.9659
105 G L -1.0143
106 T L 0.0000
107 K L -2.1157
108 L L 0.0000
109 T L -0.5349
110 V L 0.0000
111 L L 1.8342
112 W L 1.8450
1 Q H -1.5138
2 V H -0.9586
3 Q H -1.2602
4 L H 0.0000
5 V H 0.0760
6 Q H -0.3551
7 S H -0.5405
8 G H -0.4706
9 A H 0.2661
10 E H 0.1800
11 V H 1.0044
12 K H -0.9700
13 K H -2.3881
14 P H -2.3615
15 G H -2.3599
16 A H -1.8091
17 S H -1.8508
18 V H 0.0000
19 K H -1.8001
20 V H 0.0000
21 S H -0.6294
22 C H 0.0000
23 K H -0.8442
24 A H 0.0000
25 S H -0.7949
26 G H -1.0912
27 Y H -0.7366
28 T H -0.2642
29 F H 0.0000
30 T H -0.0552
31 S H 0.0000
32 S H 0.0000
33 Y H 0.0000
34 I H 0.0000
35 N H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H -0.3217
39 Q H -0.5806
40 A H -0.9741
41 P H -1.0047
42 G H -1.3073
43 Q H -1.7494
44 G H -1.1982
45 L H 0.0000
46 E H -0.7772
47 W H 0.0000
48 M H 0.0000
49 G H 0.0000
50 T H 0.0000
51 I H 0.0000
52 N H 0.0000
53 P H 0.0000
54 V H 0.0000
55 S H 0.0000
56 G H -0.5408
57 S H -0.4406
58 T H -0.1572
59 S H -0.0886
60 Y H -0.6413
61 A H 0.0000
62 Q H -2.5184
63 K H -2.7392
64 F H 0.0000
65 Q H -2.4453
66 G H -1.6109
67 R H -1.5888
68 V H 0.0000
69 T H -0.7654
70 M H 0.0000
71 T H -0.5962
72 R H -0.9780
73 D H -1.1349
74 T H -0.3391
75 S H -0.2484
76 I H 0.4480
77 S H -0.2432
78 T H 0.0000
79 A H 0.0000
80 Y H -0.8025
81 M H 0.0000
82 E H -1.3807
83 L H 0.0000
84 S H -1.8639
85 R H -2.7806
86 L H 0.0000
87 R H -3.4863
88 S H -2.4323
89 D H -2.4947
90 D H 0.0000
91 T H -0.8232
92 A H 0.0000
93 V H 0.3129
94 Y H 0.0000
95 Y H 0.0000
96 C H 0.0000
97 A H 0.0000
98 R H 0.0000
99 G H 0.0000
100 G H 0.0000
101 W H 0.0000
102 F H 0.0000
103 D H -0.2111
104 Y H -0.1917
105 W H 0.0000
106 G H 0.0000
107 Q H -1.3295
108 G H -0.6070
109 T H 0.0000
110 L H 0.8427
111 V H 0.0000
112 T H -0.1262
113 V H 0.0000
114 S H -1.3106
115 S H -1.0970
2 S B -0.1926
3 A B -0.0871
4 L B 0.0000
5 T B -0.2721
6 Q B 0.0000
7 P B -0.4544
8 A B -0.5833
9 S B -0.8217
10 V B -0.2599
11 S B -0.3905
12 G B 0.0000
13 S B -0.4408
14 P B -0.7952
15 G B -1.3819
16 Q B -1.6884
17 S B -1.1490
18 I B 0.0000
19 T B -0.1324
20 I B 0.0000
21 S B -0.2480
22 C B 0.0000
23 T B -0.4275
24 G B -0.4501
25 T B -0.5637
26 S B -0.6610
27 S B -0.4633
28 D B 0.0000
29 V B 0.0000
30 G B -0.9716
31 S B -0.5728
32 Y B -0.3235
33 N B -1.1871
34 Y B 0.0000
35 V B 0.0000
36 N B 0.0000
37 W B 0.0000
38 Y B 0.0000
39 Q B 0.0000
40 Q B 0.0000
41 H B -2.0360
42 P B -1.4348
43 G B -1.6747
44 K B -2.5519
45 A B -1.6591
46 P B 0.0000
47 K B -1.8656
48 L B 0.0000
49 M B 0.0000
50 I B 0.0000
51 Y B 0.0000
52 G B -0.8026
53 V B 0.0000
54 S B -1.1407
55 K B -1.4099
56 R B -1.5594
57 P B -1.5098
58 S B -1.4560
59 G B -0.7860
60 V B -0.9421
61 S B -1.0840
62 N B -1.7734
63 R B -1.2563
64 F B 0.0000
65 S B -0.9873
66 G B -0.7006
67 S B -0.8514
68 K B -1.1149
69 S B -0.8493
70 G B -1.0239
71 N B -0.9735
72 T B -0.7141
73 A B 0.0000
74 S B -0.3790
75 L B 0.0000
76 T B -0.3437
77 I B 0.0000
78 S B -1.2078
79 G B -1.2135
80 L B 0.0000
81 Q B -1.9425
82 A B -1.4311
83 E B -2.5618
84 D B 0.0000
85 E B -2.5376
86 A B 0.0000
87 D B -1.5364
88 Y B 0.0000
89 Y B 0.0000
90 C B 0.0000
91 G B 0.0000
92 T B 0.0000
93 F B 0.0000
94 A B 0.0000
95 G B 0.0000
96 G B -0.2805
97 S B -0.1558
98 Y B 0.6327
99 Y B 1.3746
100 G B 0.7497
101 V B 0.4571
102 F B 0.0000
103 G B 0.0000
104 G B -0.9583
105 G B -0.9943
106 T B 0.0000
107 K B -2.1434
108 L B 0.0000
109 T B -0.8661
110 V B -0.6600
111 L B 0.6343
112 W B 1.1347
113 S B -0.1502
114 H B -0.8422
115 P B -0.7627
1 Q A -1.4651
2 V A -0.8826
3 Q A -1.1561
4 L A 0.0000
5 V A 0.1353
6 Q A -0.2149
7 S A -0.5182
8 G A -0.4765
9 A A 0.2633
10 E A 0.1527
11 V A 0.9887
12 K A -1.0012
13 K A -2.3956
14 P A -2.5499
15 G A -2.3643
16 A A -1.8177
17 S A -1.8590
18 V A 0.0000
19 K A -1.8343
20 V A 0.0000
21 S A -0.5870
22 C A 0.0000
23 K A -0.6141
24 A A 0.0000
25 S A -0.6962
26 G A -0.9961
27 Y A -0.7052
28 T A -0.2878
29 F A 0.0000
30 T A -0.0798
31 S A 0.0000
32 S A 0.0000
33 Y A 0.0000
34 I A 0.0000
35 N A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A -0.3309
39 Q A -0.5888
40 A A -0.9782
41 P A -1.0077
42 G A -1.3092
43 Q A -1.7671
44 G A -1.1843
45 L A 0.0000
46 E A -0.7961
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 T A 0.0000
51 I A 0.0000
52 N A 0.0000
53 P A 0.0000
54 V A 0.0000
55 S A 0.0000
56 G A -0.5362
57 S A -0.4418
58 T A -0.1445
59 S A -0.0440
60 Y A -0.5669
61 A A 0.0000
62 Q A -2.5056
63 K A -2.7333
64 F A 0.0000
65 Q A -2.4287
66 G A -1.5983
67 R A -1.5810
68 V A 0.0000
69 T A -0.7524
70 M A 0.0000
71 T A -0.5821
72 R A -0.9378
73 D A -1.0756
74 T A -0.2726
75 S A -0.2140
76 I A 0.3234
77 S A -0.1771
78 T A 0.0000
79 A A 0.0000
80 Y A -0.7696
81 M A 0.0000
82 E A -1.3889
83 L A 0.0000
84 S A -1.8622
85 R A -2.7760
86 L A 0.0000
87 R A -3.4817
88 S A -2.4223
89 D A -2.4894
90 D A 0.0000
91 T A -0.8261
92 A A 0.0000
93 V A 0.3025
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 R A 0.0000
99 G A 0.0000
100 G A 0.0000
101 W A 0.0000
102 F A 0.0000
103 D A -0.3393
104 Y A -0.2571
105 W A -0.3748
106 G A 0.0000
107 Q A -1.2946
108 G A -0.5870
109 T A 0.0000
110 L A 0.8309
111 V A 0.0000
112 T A -0.1280
113 V A 0.0000
114 S A -1.2825
115 S A -1.0863
27 R C -2.6395
28 E C -2.0325
29 C C 0.0000
30 I C 0.0573
31 Y C 0.0201
32 Y C -0.1647
33 N C 0.0000
34 A C -0.8806
35 N C -1.5694
36 W C -1.8185
37 E C -2.2728
38 L C -0.1303
39 E C -1.1896
40 R C -2.4144
41 T C -2.0159
42 N C -2.3602
43 Q C -1.9654
44 S C -0.5901
45 G C 0.0623
46 L C 0.6276
47 E C -0.9796
48 R C -2.7346
49 C C -2.4206
50 E C -2.8258
51 G C -2.6171
52 E C -2.4935
53 Q C -2.8256
54 D C -3.0982
55 K C -2.2964
56 R C -1.5496
57 L C 0.0000
58 H C 0.0000
59 C C 0.0000
60 Y C 0.0000
61 A C 0.0000
62 S C 0.0000
63 W C 0.0000
64 R C -1.4502
65 N C -1.4076
66 S C -1.0063
67 S C -0.5420
68 G C -0.6366
69 T C -0.1174
70 I C 0.6785
71 E C -0.6708
72 L C -0.0980
73 V C 0.0000
74 K C 0.0000
75 K C 0.0000
76 G C 0.0000
77 C C 0.0000
78 W C 0.0000
79 L C -0.3095
80 D C 0.0000
81 D C 0.0000
82 F C -0.3016
83 N C -0.7757
84 C C 0.0000
85 Y C -1.5704
86 D C -3.2107
87 R C -3.8514
88 Q C -3.5752
89 E C -3.5129
90 C C 0.0000
91 V C -0.7003
92 A C 0.0000
93 T C -0.6909
94 E C -1.8530
95 E C -2.6865
96 N C -2.5331
97 P C -2.1258
98 Q C -2.1364
99 V C -1.3496
100 Y C 0.0000
101 F C -0.1451
102 C C 0.0000
103 C C -0.5752
104 C C 0.0000
105 E C -2.2410
106 G C -1.8862
107 N C -1.7907
108 F C -0.1688
109 C C -1.5261
110 N C 0.0000
111 E C -1.7053
112 R C -2.2929
113 F C -1.1101
114 T C -0.2928
115 H C 0.0057
116 L C 0.7912
27 R D -2.3879
28 E D -1.9241
29 C D 0.0000
30 I D -0.2464
31 Y D -0.1315
32 Y D -0.1405
33 N D 0.0000
34 A D -0.5283
35 N D -0.9740
36 W D -1.5261
37 E D -2.1105
38 L D -0.0956
39 E D -1.0561
40 R D -2.3341
41 T D -1.9234
42 N D -2.3039
43 Q D -1.8965
44 S D -0.6132
45 G D 0.0293
46 L D 0.6601
47 E D -1.0017
48 R D -2.6636
49 C D -2.2871
50 E D -2.8060
51 G D -2.6713
52 E D -2.7521
53 Q D -2.8259
54 D D -2.9729
55 K D -2.2792
56 R D -1.4978
57 L D -1.2893
58 H D 0.0000
59 C D 0.0000
60 Y D 0.0000
61 A D 0.0000
62 S D 0.0000
63 W D 0.0000
64 R D -1.4760
65 N D -1.4187
66 S D -1.0153
67 S D -0.5477
68 G D -0.6379
69 T D -0.1151
70 I D 0.6939
71 E D -0.6163
72 L D 0.0505
73 V D 0.1253
74 K D 0.0000
75 K D 0.0000
76 G D 0.0000
77 C D 0.0000
78 W D 0.0000
79 L D 0.0000
80 D D 0.0000
81 D D 0.0000
82 F D -0.2152
83 N D -0.3871
84 C D 0.0000
85 Y D -1.0317
86 D D -2.4922
87 R D -2.4476
88 Q D -2.9046
89 E D -3.2004
90 C D 0.0000
91 V D -0.5800
92 A D 0.0000
93 T D -0.8284
94 E D -2.0593
95 E D -2.8599
96 N D -2.7863
97 P D -2.1619
98 Q D -2.1627
99 V D -1.3606
100 Y D 0.0000
101 F D -0.1985
102 C D 0.0000
103 C D 0.0000
104 C D 0.0000
105 E D -1.8182
106 G D -1.6226
107 N D -1.7790
108 F D -0.5703
109 C D -1.6756
110 N D 0.0000
111 E D -2.5433
112 R D -2.6459
113 F D -1.2680
114 T D -0.3008
115 H D -0.0744
116 L D 0.8245
117 P D -0.6650
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Laboratory of Theory of Biopolymers 2018