Project name: SPC

Status: done

Started: 2024-07-03 19:14:50
Settings
Chain sequence(s) A: LRIPCCPVNLKRLLVVVVVVVLVVVVIVGALLMGL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-0.5093
Maximal score value
6.7227
Average score
3.421
Total score value
119.7335

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.0478
2 R A -0.1172
3 I A 1.9094
4 P A 1.2384
5 C A 1.4332
6 C A 1.3664
7 P A 1.0162
8 V A 1.2779
9 N A -0.5093
10 L A 0.8835
11 K A -0.2129
12 R A -0.0865
13 L A 2.0184
14 L A 2.9362
15 V A 3.9946
16 V A 5.0054
17 V A 5.2947
18 V A 6.0594
19 V A 6.2034
20 V A 6.5069
21 V A 6.7227
22 L A 6.5292
23 V A 6.1797
24 V A 6.1546
25 V A 6.0925
26 V A 5.9373
27 I A 6.0600
28 V A 5.0398
29 G A 3.8642
30 A A 3.9253
31 L A 4.4619
32 L A 3.6714
33 M A 2.7882
34 G A 1.9750
35 L A 3.0658
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Laboratory of Theory of Biopolymers 2018