Project name: ECD_3_1st

Status: done

Started: 2024-06-18 21:04:06
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLNNIMLRLGCTLERSKIKEVKNKPKVIDLALEAQFTTMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNLLSSRMKGDLNLSLVMTTCSTRCARENMAELLEKYSRGIYDGDLKDKVPYKGIDISLELVLKPCTEGIELKSKRPQLLRPLMKELEKKVEELTKEVTELSKKNVGKSIMFAMTPKILETSSLMPRLGYLKGLEISEKACLNGRCRRTVSVETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMENQLKEGDELVERLKKEEKEKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:03)
Show buried residues

Minimal score value
-5.4575
Maximal score value
2.1281
Average score
-1.1743
Total score value
-354.64

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.4006
2 F A 1.1783
3 T A 0.6142
4 L A 0.2299
5 P A -0.3808
6 P A -1.0731
7 N A -2.2348
8 F A 0.0000
9 G A -1.4623
10 K A -2.3691
11 R A -1.5508
12 P A -0.7006
13 T A -0.6978
14 D A -0.7278
15 L A 0.7545
16 E A -0.3559
17 L A 0.0000
18 S A 0.7485
19 V A 1.2376
20 K A -0.3030
21 L A 0.0000
22 V A 0.2627
23 E A -0.7151
24 M A 0.0000
25 L A 0.0000
26 N A -0.7907
27 N A 0.0000
28 I A 0.0000
29 M A 0.0000
30 L A -0.6864
31 R A -1.3149
32 L A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.3356
36 L A 0.0000
37 E A -2.7421
38 R A -3.4526
39 S A -2.6776
40 K A -3.0507
41 I A -2.9586
42 K A -4.3169
43 E A -4.4180
44 V A 0.0000
45 K A -4.3378
46 N A -3.9843
47 K A -4.1327
48 P A -3.1858
49 K A -3.2133
50 V A 0.0000
51 I A 0.0000
52 D A -2.9313
53 L A -1.5681
54 A A 0.0000
55 L A -1.2979
56 E A -2.0601
57 A A 0.0000
58 Q A 0.0000
59 F A -0.6104
60 T A -0.8886
61 T A -0.8762
62 M A 0.0000
63 P A 0.0000
64 K A -2.1207
65 T A 0.0000
66 A A 0.0000
67 L A -1.3414
68 E A -2.3840
69 L A 0.0000
70 A A 0.0000
71 K A -1.9520
72 V A 0.0928
73 F A -1.1954
74 R A -2.4742
75 L A -1.9016
76 K A -2.6360
77 N A -2.1685
78 I A -0.4579
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.1586
94 L A 0.4358
95 S A 0.0000
96 N A 0.0000
97 L A 0.3835
98 L A 0.0000
99 S A 0.0000
100 S A -1.3818
101 R A -2.6000
102 M A 0.0000
103 K A -2.6559
104 G A 0.0000
105 D A -1.4385
106 L A -0.2114
107 N A -0.5246
108 L A 0.0000
109 S A 0.0000
110 L A 0.0658
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A -0.1444
115 C A -0.3054
116 S A 0.0000
117 T A 0.0000
118 R A -1.8512
119 C A -1.4684
120 A A 0.0000
121 R A -3.4913
122 E A -3.4639
123 N A -2.3375
124 M A 0.0000
125 A A -2.0932
126 E A -2.5720
127 L A -1.5817
128 L A 0.0000
129 E A -2.3721
130 K A -2.4019
131 Y A -1.7057
132 S A 0.0000
133 R A -2.9001
134 G A -2.0473
135 I A -1.5360
136 Y A -1.8658
137 D A -2.6483
138 G A -2.5948
139 D A -3.4018
140 L A -3.0861
141 K A -3.3302
142 D A -2.9355
143 K A -2.1230
144 V A 0.0000
145 P A -1.0789
146 Y A -0.8871
147 K A -1.4604
148 G A -0.6420
149 I A 0.0000
150 D A -2.2100
151 I A -0.5072
152 S A 0.0000
153 L A 0.0000
154 E A -1.8805
155 L A -0.7826
156 V A 0.0000
157 L A 0.0000
158 K A -2.2101
159 P A 0.0000
160 C A 0.0000
161 T A -1.7381
162 E A -2.7342
163 G A 0.0000
164 I A 0.0000
165 E A -3.3702
166 L A -2.3263
167 K A -2.5763
168 S A -2.8799
169 K A -3.1949
170 R A -3.1354
171 P A -2.3414
172 Q A -1.9881
173 L A -0.7454
174 L A -1.4448
175 R A -2.3174
176 P A -1.6552
177 L A -1.7859
178 M A -2.4376
179 K A -4.1021
180 E A -4.3532
181 L A 0.0000
182 E A -4.7458
183 K A -5.0473
184 K A -4.2186
185 V A -3.8533
186 E A -4.6917
187 E A -4.4654
188 L A 0.0000
189 T A -2.9154
190 K A -3.6139
191 E A -3.4044
192 V A 0.0000
193 T A -2.5049
194 E A -3.2537
195 L A 0.0000
196 S A -2.2049
197 K A -3.4246
198 K A -3.1931
199 N A 0.0000
200 V A 0.0000
201 G A -2.1260
202 K A -1.5517
203 S A 0.2651
204 I A 0.6323
205 M A 1.4817
206 F A 2.1281
207 A A 1.3127
208 M A 0.0000
209 T A 0.2744
210 P A -0.5415
211 K A -1.3568
212 I A 0.0000
213 L A -0.2520
214 E A -1.5738
215 T A 0.0000
216 S A 0.0000
217 S A -0.9411
218 L A -0.2411
219 M A 0.0000
220 P A 0.0000
221 R A -0.9559
222 L A 0.0272
223 G A 0.0000
224 Y A 0.0000
225 L A 0.0788
226 K A -0.8714
227 G A 0.0000
228 L A -1.1093
229 E A -2.4669
230 I A -1.4352
231 S A 0.0000
232 E A -3.1661
233 K A -2.6333
234 A A -1.4853
235 C A -0.9119
236 L A -1.3581
237 N A -2.1929
238 G A -2.2626
239 R A -3.0362
240 C A 0.0000
241 R A -2.3632
242 R A -1.9198
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 V A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.1369
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.2833
262 V A 1.0847
263 A A 0.1034
264 F A 0.0000
265 P A -0.1163
266 P A -0.7866
267 E A -1.1508
268 V A 0.8689
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.0000
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.1006
278 L A 0.0394
279 Y A 0.0000
280 M A -0.5061
281 E A -1.7822
282 N A -1.5552
283 Q A 0.0000
284 L A -1.4214
285 K A -2.8545
286 E A 0.0000
287 G A 0.0000
288 D A -3.8594
289 E A -3.8995
290 L A -2.9618
291 V A 0.0000
292 E A -4.7743
293 R A -4.4730
294 L A -3.8742
295 K A -4.4482
296 K A -5.2519
297 E A -5.4575
298 E A -4.8743
299 K A -5.2399
300 E A -5.2803
301 K A -4.7869
302 E A -4.0963
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Laboratory of Theory of Biopolymers 2018