Project name: csga-asyn (cluster3)

Status: done

Started: 2026-03-24 09:30:10
Settings
Chain sequence(s) A: SSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQWPP
B: VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-4.1636
Maximal score value
3.1302
Average score
-0.5819
Total score value
-91.936

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 S A -0.6718
4 S A -0.6671
5 Q A 0.0000
6 I A 0.0000
7 T A -1.0081
8 F A 0.0000
9 N A 0.0725
10 T A 0.0000
11 T A 1.4118
12 Q A 0.5090
13 Q A -1.1320
14 G A -1.4222
15 D A -1.6672
16 M A -0.8965
17 Y A -0.0027
18 T A -0.4090
19 I A 0.0000
20 I A -0.4409
21 P A 0.0000
22 E A -0.4071
23 V A 0.0000
24 T A -0.8597
25 L A 0.0000
26 T A -1.3271
27 Q A -1.6346
28 S A -0.8509
29 C A 0.0722
30 L A 0.9372
31 C A 0.0000
32 R A -2.7818
33 V A 0.0000
34 Q A -2.7712
35 I A 0.0000
36 L A -1.2665
37 S A 0.0000
38 L A -1.3964
39 R A -2.0583
40 E A -2.7770
41 G A -2.2902
42 S A -1.4599
43 S A -1.1052
44 G A -1.5061
45 Q A -2.3964
46 S A -1.5275
47 Q A -1.8385
48 T A -1.5702
49 K A -2.8588
50 Q A -3.4159
51 E A -4.1636
52 K A -3.5142
53 T A -1.8645
54 L A -0.4393
55 S A 0.1352
56 L A 0.0000
57 P A -0.7468
58 A A -1.5259
59 N A -2.0693
60 Q A -1.7637
61 P A -0.7670
62 I A 0.0210
63 A A -0.1057
64 L A -0.1235
65 T A -0.8938
66 K A -1.6386
67 L A 0.0000
68 S A -0.5645
69 L A -0.3844
70 N A -0.9253
71 I A -1.1664
72 S A -1.4324
73 P A -1.6094
74 D A -2.6105
75 D A -2.7160
76 R A -3.0356
77 V A -1.8943
78 K A -1.3050
79 I A 0.0000
80 V A -0.1748
81 V A 0.0000
82 T A -0.8596
83 V A 0.0000
84 S A -1.4067
85 D A -1.3735
86 G A -1.5474
87 Q A -1.7279
88 S A -1.0693
89 L A -0.8455
90 H A -1.3695
91 L A -0.3385
92 S A -0.4890
93 Q A 0.0000
94 Q A -0.3462
95 W A 0.0000
96 P A -0.3449
97 P A -0.9131
37 V B 2.7628
38 L B 3.1302
39 Y B 2.8615
40 V B 2.6722
41 G B 0.6939
42 S B -0.0022
43 K B -1.7818
44 T B 0.0000
45 K B -1.7738
46 E B -1.7795
47 G B -0.9865
48 V B -0.2350
49 V B 0.7527
50 H B -0.1967
51 G B 0.1220
52 V B 1.4714
53 A B 1.0536
54 T B 1.2458
55 V B 1.1568
56 A B -0.4348
57 E B -2.4119
58 K B -3.3814
59 T B -2.5356
60 K B -3.5215
61 E B -3.2982
62 Q B -1.9234
63 V B 0.3494
64 T B 0.0579
65 N B -0.1953
66 V B 0.7800
67 G B 0.0161
68 G B -0.0096
69 A B 0.7188
70 V B 2.1224
71 V B 2.5995
72 T B 1.3827
73 G B 0.8431
74 V B 2.2834
75 T B 1.5226
76 A B 1.4517
77 V B 2.1045
78 A B 0.4806
79 Q B -0.5382
80 K B -1.4648
81 T B -1.0141
82 V B -1.0392
83 E B -1.9476
84 G B -1.3496
85 A B -0.6050
86 G B -0.4719
87 S B 0.4420
88 I B 2.0034
89 A B 1.5202
90 A B 0.8638
91 A B 0.8615
92 T B 0.7592
93 G B 0.6359
94 F B 2.0545
95 V B 1.4176
96 K B -1.6126
97 K B -3.2870
98 D B -3.5775
99 Q B -2.4315
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018