Project name: P2C5

Status: done

Started: 2026-07-29 09:06:36
Settings
Chain sequence(s) H: EVQLQQPGVELVKPGASVKLSCKASGYTFTNYWMHWVKQRPGRGLEWIGRIDPDNGETKYNEKFKTKATLTVDKPSSTAYMHLSSLTSDDSAVYYCARRAYYSKNAMDYWGQGTSVTVSS
L: DIVLTQSPASLAVSLGQRATISCRASESVDNYGISFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVETDDVATYYCQQSNKDPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:38)
Show buried residues

Minimal score value
-3.5284
Maximal score value
1.6683
Average score
-0.7024
Total score value
-162.2637

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1687
2 V H -1.4042
3 Q H -2.0702
4 L H 0.0000
5 Q H -2.0378
6 Q H 0.0000
7 P H -0.3927
8 G H -0.0431
9 V H 1.6683
11 E H 0.8788
12 L H 1.3891
13 V H 0.0235
14 K H -1.6469
15 P H -1.3790
16 G H -1.1017
17 A H -0.8890
18 S H -1.0154
19 V H 0.0000
20 K H -1.6707
21 L H 0.0000
22 S H -0.7130
23 C H 0.0000
24 K H -1.5565
25 A H 0.0000
26 S H -1.3738
27 G H -1.2687
28 Y H -0.7046
29 T H -0.5080
30 F H 0.0000
35 T H -1.5972
36 N H -1.1706
37 Y H -0.1439
38 W H -0.2623
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -1.0223
45 R H -1.6156
46 P H -1.2187
47 G H -1.6423
48 R H -2.5426
49 G H -1.5527
50 L H 0.0000
51 E H -1.2740
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 R H 0.0000
56 I H 0.0000
57 D H 0.0000
58 P H 0.0000
59 D H -2.9982
62 N H -2.4645
63 G H -1.7314
64 E H -1.8024
65 T H -1.1574
66 K H -1.6130
67 Y H -1.8343
68 N H -2.6390
69 E H -3.5284
70 K H -3.2023
71 F H 0.0000
72 K H -3.0319
74 T H -1.6584
75 K H -1.4262
76 A H 0.0000
77 T H -0.7219
78 L H 0.0000
79 T H -0.3912
80 V H -0.7087
81 D H -1.1903
82 K H -1.7975
83 P H -0.9174
84 S H -0.7979
85 S H -0.8789
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3524
89 M H 0.0000
90 H H -1.0854
91 L H 0.0000
92 S H -0.7805
93 S H -0.8180
94 L H 0.0000
95 T H -1.2599
96 S H -1.4486
97 D H -1.9875
98 D H 0.0000
99 S H -0.6543
100 A H 0.0000
101 V H 0.2494
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 R H 0.1602
108 A H 0.0000
109 Y H 1.0670
110 Y H 1.3417
111 S H 0.3997
112 K H 0.0350
113 N H 0.1308
114 A H 0.0000
115 M H 0.0000
116 D H -0.3318
117 Y H 0.0281
118 W H -0.5906
119 G H 0.0000
120 Q H -1.5809
121 G H 0.0000
122 T H 0.0000
123 S H 0.5727
124 V H 0.0000
125 T H 0.2228
126 V H 0.0000
127 S H -0.5436
128 S H -0.6911
1 D L -2.0570
2 I L 0.0000
3 V L 0.6386
4 L L 0.0000
5 T L -0.5959
6 Q L -0.6710
7 S L -0.6281
8 P L -0.5076
9 A L -0.6141
10 S L -1.1235
11 L L -0.8497
12 A L -0.9799
13 V L 0.0000
14 S L -1.3437
15 L L -0.5683
16 G L -1.4022
17 Q L -2.5413
18 R L -2.8527
19 A L 0.0000
20 T L -0.6420
21 I L 0.0000
22 S L -0.8993
23 C L 0.0000
24 R L -2.5717
25 A L 0.0000
26 S L -1.3140
27 E L -2.3241
28 S L -2.1860
29 V L 0.0000
30 D L -1.2502
31 N L -0.6251
34 Y L 0.9225
35 G L 0.0076
36 I L 0.3118
37 S L -0.5871
38 F L -0.4061
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.2538
45 K L -1.5264
46 P L -1.0367
47 G L -1.4253
48 Q L -2.1115
49 P L -1.3573
50 P L 0.0000
51 K L -1.6646
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.2909
56 R L -0.3685
57 A L 0.0000
65 S L -0.4716
66 N L -0.5372
67 L L 0.0044
68 E L -0.5187
69 S L -0.4905
70 G L -0.5743
71 I L 0.0000
72 P L -0.2927
74 A L -0.2555
75 R L -0.9577
76 F L 0.0000
77 S L -0.4284
78 G L -0.4168
79 S L -0.7778
80 G L -1.4575
83 S L -1.7017
84 R L -2.8714
85 T L -2.5351
86 D L -2.5824
87 F L 0.0000
88 T L -0.7798
89 L L 0.0000
90 T L -0.8016
91 I L 0.0000
92 N L -2.0864
93 P L -1.8429
94 V L 0.0000
95 E L -1.8251
96 T L -1.3891
97 D L -1.8935
98 D L 0.0000
99 V L -0.7370
100 A L 0.0000
101 T L -1.0827
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 N L -1.3259
109 K L -2.4456
114 D L -2.4915
115 P L -2.2798
116 W L 0.0000
117 T L -0.4291
118 F L 0.1497
119 G L 0.0000
120 G L -0.7513
121 G L -1.0647
122 T L 0.0000
123 K L -2.0601
124 L L 0.0000
125 E L -2.1401
126 I L -1.1956
127 K L -1.7967
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Laboratory of Theory of Biopolymers 2018