Project name: 2-10E2

Status: done

Started: 2025-07-01 05:20:46
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Chain sequence(s) H: QVQLQQSGAELARPGASVKLSCKASGYTLSSYWMQWVKQRPGQGLEWIGAIYPGDGDTRYTQKFKGKATLTADKSSSTAYMQLSSLASEDSAVYYCARGGAYYFDYWGQGTTLTVSS
L: QIVLTQSPALMSASPGEKVTMTCSASSSVSHIYWYQQKPRSSPKPWIYLTSNLASGVPARFSGSGSGTSYSLTISSMEAEDVATYYCQQWRRNVTFGSGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:30)
Show buried residues

Minimal score value
-3.1895
Maximal score value
1.3102
Average score
-0.5756
Total score value
-127.7894

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4746
2 V H -0.8964
3 Q H -1.6741
4 L H 0.0000
5 Q H -2.1626
6 Q H -1.4228
7 S H -1.1233
8 G H -1.0414
9 A H -0.3205
11 E H -0.4748
12 L H 0.6439
13 A H -0.5911
14 R H -1.9175
15 P H -1.5403
16 G H -1.2296
17 A H -0.9914
18 S H -0.9805
19 V H -0.7557
20 K H -1.2575
21 L H 0.0000
22 S H -0.7180
23 C H 0.0000
24 K H -1.6369
25 A H 0.0000
26 S H -1.1693
27 G H -0.9761
28 Y H -0.3584
29 T H -0.2844
30 L H 0.0000
35 S H -0.8081
36 S H -0.1941
37 Y H 0.4383
38 W H 0.2065
39 M H 0.0000
40 Q H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.8935
45 R H -1.5319
46 P H -1.2679
47 G H -1.3897
48 Q H -1.9062
49 G H -1.2443
50 L H 0.0000
51 E H -0.8428
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 A H 0.0000
56 I H 0.0000
57 Y H -0.5867
58 P H 0.0000
59 G H -1.3752
62 D H -2.3697
63 G H -1.7494
64 D H -1.7456
65 T H -1.2847
66 R H -1.8897
67 Y H -1.6946
68 T H 0.0000
69 Q H -2.8888
70 K H -2.8084
71 F H 0.0000
72 K H -2.9205
74 G H -1.8602
75 K H -1.5796
76 A H 0.0000
77 T H -0.7848
78 L H 0.0000
79 T H -0.5239
80 A H -1.0395
81 D H -1.5335
82 K H -2.1705
83 S H -1.1630
84 S H -0.9866
85 S H -1.1506
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3038
89 M H 0.0000
90 Q H -1.0335
91 L H 0.0000
92 S H -0.7936
93 S H -0.8658
94 L H 0.0000
95 A H -1.2430
96 S H -1.4121
97 E H -1.9891
98 D H 0.0000
99 S H -0.7039
100 A H 0.0000
101 V H -0.1529
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 G H 0.4134
109 A H 0.6347
113 Y H 1.1231
114 Y H 0.8339
115 F H 0.0000
116 D H 0.1060
117 Y H 0.1274
118 W H -0.4080
119 G H 0.0000
120 Q H -1.7907
121 G H -1.0114
122 T H 0.0000
123 T H -0.2152
124 L H 0.0000
125 T H -0.2553
126 V H 0.0000
127 S H -0.7151
128 S H -0.8636
1 Q L -1.5282
2 I L 0.0000
3 V L 1.3102
4 L L 0.0000
5 T L 0.1664
6 Q L 0.0000
7 S L -0.0918
8 P L 0.1693
9 A L 0.4446
10 L L 1.0420
11 M L 0.3453
12 S L -0.4023
13 A L 0.0000
14 S L -1.6118
15 P L -1.8059
16 G L -2.1647
17 E L -3.1895
18 K L -2.7526
19 V L 0.0000
20 T L -0.6931
21 M L 0.0000
22 T L -0.2574
23 C L 0.0000
24 S L -0.1430
25 A L 0.0000
26 S L 0.0129
27 S L -0.4178
28 S L -0.7601
29 V L 0.0000
37 S L -0.7382
38 H L -0.6255
39 I L 0.0000
40 Y L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.2944
46 P L -1.4218
47 R L -2.2872
48 S L -1.6149
49 S L -1.0195
50 P L 0.0000
51 K L -0.7767
52 P L -0.2605
53 W L 0.0000
54 I L 0.0000
55 Y L 0.2462
56 L L 0.1574
57 T L 0.0000
65 S L -0.5826
66 N L -0.6786
67 L L -0.0651
68 A L -0.2272
69 S L -0.4192
70 G L -0.4218
71 V L -0.2464
72 P L -0.1348
74 A L -0.1041
75 R L -0.7434
76 F L 0.0000
77 S L -0.4067
78 G L 0.0000
79 S L -0.6374
80 G L -0.7713
83 S L -0.7451
84 G L -0.7126
85 T L -0.6305
86 S L -0.6034
87 Y L 0.0000
88 S L -0.3510
89 L L 0.0000
90 T L -0.5816
91 I L 0.0000
92 S L -1.4924
93 S L -2.0439
94 M L 0.0000
95 E L -1.9944
96 A L -0.9111
97 E L -1.1340
98 D L 0.0000
99 V L -0.2871
100 A L 0.0000
101 T L -0.4275
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L -0.6179
108 R L -2.1328
114 R L -2.5972
115 N L -1.6942
116 V L 0.0000
117 T L -0.3005
118 F L 0.0000
119 G L 0.0000
120 S L -0.4115
121 G L 0.0000
122 T L 0.0000
123 K L -0.5114
124 L L 0.0000
125 E L -0.4400
126 I L 0.0358
127 K L -1.3929
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Laboratory of Theory of Biopolymers 2018