| Chain sequence(s) |
A: AMYPYDVPDYAGSGGSQLQLVESGGGLVQPGGSLRLSCAASGFSLDPYVIGWFRQAPGKEREGVSCITSRAASRTSVDSVNERFTISRDNAKNTVDLHINNLKPEDSGVYYCAAVPPAKLPLFSLCRSLPAKYDYWGQGTQVTVSSAHHSEDPSGSGGSGSGGSGSGASAYRPSRTLCGGELVDTLQLVCGDRGFYFSRPASRVSRRPRGIVEECCFRSCDLALLETYCATPAKSEAAALEHHHHHH
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:31)
[INFO] Main: Simulation completed successfully. (00:02:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | 0.9125 | |
| 2 | M | A | 1.8415 | |
| 3 | Y | A | 1.8328 | |
| 4 | P | A | 1.0457 | |
| 5 | Y | A | 1.3655 | |
| 6 | D | A | -0.5293 | |
| 7 | V | A | 0.8875 | |
| 8 | P | A | -0.1141 | |
| 9 | D | A | -1.1028 | |
| 10 | Y | A | 0.5331 | |
| 11 | A | A | -0.2394 | |
| 12 | G | A | -0.8367 | |
| 13 | S | A | -0.7597 | |
| 14 | G | A | -1.1847 | |
| 15 | G | A | -1.2982 | |
| 16 | S | A | -1.3249 | |
| 17 | Q | A | -1.6206 | |
| 18 | L | A | 0.0000 | |
| 19 | Q | A | -0.8045 | |
| 20 | L | A | 0.0000 | |
| 21 | V | A | 0.0000 | |
| 22 | E | A | 0.0000 | |
| 23 | S | A | 0.0000 | |
| 24 | G | A | -1.5565 | |
| 25 | G | A | -0.9765 | |
| 26 | G | A | -0.1671 | |
| 27 | L | A | 0.2924 | |
| 28 | V | A | 0.0000 | |
| 29 | Q | A | -1.7587 | |
| 30 | P | A | -1.8471 | |
| 31 | G | A | -1.8719 | |
| 32 | G | A | -1.4277 | |
| 33 | S | A | -1.4709 | |
| 34 | L | A | -0.9426 | |
| 35 | R | A | -1.6700 | |
| 36 | L | A | 0.0000 | |
| 37 | S | A | 0.0000 | |
| 38 | C | A | 0.0000 | |
| 39 | A | A | 0.0000 | |
| 40 | A | A | 0.0000 | |
| 41 | S | A | 0.0000 | |
| 42 | G | A | -0.4256 | |
| 43 | F | A | 0.2691 | |
| 44 | S | A | -0.1553 | |
| 45 | L | A | 0.0000 | |
| 46 | D | A | -1.3473 | |
| 47 | P | A | -0.7224 | |
| 48 | Y | A | -0.4004 | |
| 49 | V | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | G | A | 0.0000 | |
| 52 | W | A | 0.0000 | |
| 53 | F | A | 0.0000 | |
| 54 | R | A | -1.2732 | |
| 55 | Q | A | -1.9533 | |
| 56 | A | A | -1.9211 | |
| 57 | P | A | -1.3780 | |
| 58 | G | A | -1.9202 | |
| 59 | K | A | -3.2733 | |
| 60 | E | A | -3.4033 | |
| 61 | R | A | -2.5413 | |
| 62 | E | A | -1.8735 | |
| 63 | G | A | 0.0000 | |
| 64 | V | A | 0.0000 | |
| 65 | S | A | 0.0000 | |
| 66 | C | A | 0.0000 | |
| 67 | I | A | 0.0000 | |
| 68 | T | A | -0.5531 | |
| 69 | S | A | 0.0000 | |
| 70 | R | A | -2.5373 | |
| 71 | A | A | -1.2932 | |
| 72 | A | A | -1.3682 | |
| 73 | S | A | -1.4154 | |
| 74 | R | A | -2.1213 | |
| 75 | T | A | -1.1306 | |
| 76 | S | A | -0.1239 | |
| 77 | V | A | 1.1519 | |
| 78 | D | A | 0.1513 | |
| 79 | S | A | -0.2458 | |
| 80 | V | A | -0.2459 | |
| 81 | N | A | -1.1670 | |
| 82 | E | A | -2.1716 | |
| 83 | R | A | -1.7530 | |
| 84 | F | A | 0.0000 | |
| 85 | T | A | -0.7745 | |
| 86 | I | A | 0.0000 | |
| 87 | S | A | -0.4208 | |
| 88 | R | A | -1.5425 | |
| 89 | D | A | -1.6908 | |
| 90 | N | A | -2.3865 | |
| 91 | A | A | -2.0434 | |
| 92 | K | A | -2.7372 | |
| 93 | N | A | -1.8730 | |
| 94 | T | A | 0.0000 | |
| 95 | V | A | 0.0000 | |
| 96 | D | A | -0.8620 | |
| 97 | L | A | 0.0000 | |
| 98 | H | A | -1.2047 | |
| 99 | I | A | 0.0000 | |
| 100 | N | A | -2.0797 | |
| 101 | N | A | -2.2494 | |
| 102 | L | A | 0.0000 | |
| 103 | K | A | -2.4774 | |
| 104 | P | A | -1.9229 | |
| 105 | E | A | -2.3054 | |
| 106 | D | A | 0.0000 | |
| 107 | S | A | -1.0887 | |
| 108 | G | A | -1.0185 | |
| 109 | V | A | -0.5150 | |
| 110 | Y | A | 0.0000 | |
| 111 | Y | A | -0.3595 | |
| 112 | C | A | 0.0000 | |
| 113 | A | A | 0.0000 | |
| 114 | A | A | 0.0000 | |
| 115 | V | A | 0.0000 | |
| 116 | P | A | -0.6443 | |
| 117 | P | A | -0.2542 | |
| 118 | A | A | -0.2975 | |
| 119 | K | A | -1.1125 | |
| 120 | L | A | 0.0000 | |
| 121 | P | A | 0.4272 | |
| 122 | L | A | 1.5470 | |
| 123 | F | A | 1.1101 | |
| 124 | S | A | 0.6994 | |
| 125 | L | A | 0.6708 | |
| 126 | C | A | 0.0000 | |
| 127 | R | A | -0.4530 | |
| 128 | S | A | -0.3689 | |
| 129 | L | A | -0.1246 | |
| 130 | P | A | -0.4748 | |
| 131 | A | A | -0.3984 | |
| 132 | K | A | -1.0692 | |
| 133 | Y | A | 0.0000 | |
| 134 | D | A | -1.2088 | |
| 135 | Y | A | -0.3822 | |
| 136 | W | A | -0.1056 | |
| 137 | G | A | -0.4557 | |
| 138 | Q | A | -1.1175 | |
| 139 | G | A | 0.0000 | |
| 140 | T | A | 0.0000 | |
| 141 | Q | A | -1.0968 | |
| 142 | V | A | 0.0000 | |
| 143 | T | A | -0.6252 | |
| 144 | V | A | 0.0000 | |
| 145 | S | A | -0.9918 | |
| 146 | S | A | -1.1154 | |
| 147 | A | A | -0.9440 | |
| 148 | H | A | -2.0192 | |
| 149 | H | A | -2.3079 | |
| 150 | S | A | -2.4613 | |
| 151 | E | A | -3.4015 | |
| 152 | D | A | -3.1620 | |
| 153 | P | A | -2.0231 | |
| 154 | S | A | -1.4920 | |
| 155 | G | A | -1.5012 | |
| 156 | S | A | -0.9197 | |
| 157 | G | A | -1.1055 | |
| 158 | G | A | -1.0833 | |
| 159 | S | A | -0.9428 | |
| 160 | G | A | -1.0714 | |
| 161 | S | A | -0.9136 | |
| 162 | G | A | -1.0861 | |
| 163 | G | A | -1.0641 | |
| 164 | S | A | -0.9188 | |
| 165 | G | A | -1.0000 | |
| 166 | S | A | -0.7860 | |
| 167 | G | A | -0.7576 | |
| 168 | A | A | -0.3260 | |
| 169 | S | A | -0.4923 | |
| 170 | A | A | -0.4848 | |
| 171 | Y | A | -0.8042 | |
| 172 | R | A | -2.2038 | |
| 173 | P | A | -1.7576 | |
| 174 | S | A | -2.0030 | |
| 175 | R | A | -2.3001 | |
| 176 | T | A | -1.1227 | |
| 177 | L | A | 0.0000 | |
| 178 | C | A | -0.3965 | |
| 179 | G | A | -0.9740 | |
| 180 | G | A | -1.6463 | |
| 181 | E | A | -2.4632 | |
| 182 | L | A | 0.0000 | |
| 183 | V | A | 0.0000 | |
| 184 | D | A | -2.0676 | |
| 185 | T | A | -0.7327 | |
| 186 | L | A | 0.0000 | |
| 187 | Q | A | -1.0006 | |
| 188 | L | A | 0.7041 | |
| 189 | V | A | 0.1677 | |
| 190 | C | A | 0.0000 | |
| 191 | G | A | -1.3440 | |
| 192 | D | A | -2.6127 | |
| 193 | R | A | -2.0809 | |
| 194 | G | A | -1.4301 | |
| 195 | F | A | 0.0000 | |
| 196 | Y | A | -0.0345 | |
| 197 | F | A | 0.0000 | |
| 198 | S | A | -1.2496 | |
| 199 | R | A | -1.9262 | |
| 200 | P | A | -1.5691 | |
| 201 | A | A | -1.7761 | |
| 202 | S | A | -1.3911 | |
| 203 | R | A | -1.6912 | |
| 204 | V | A | 0.0957 | |
| 205 | S | A | -1.4553 | |
| 206 | R | A | -2.8712 | |
| 207 | R | A | -3.2483 | |
| 208 | P | A | -2.6013 | |
| 209 | R | A | -2.5681 | |
| 210 | G | A | -1.2888 | |
| 211 | I | A | 0.0000 | |
| 212 | V | A | 0.2692 | |
| 213 | E | A | -0.2245 | |
| 214 | E | A | -0.6096 | |
| 215 | C | A | 0.0000 | |
| 216 | C | A | 0.1935 | |
| 217 | F | A | 1.0435 | |
| 218 | R | A | -1.3702 | |
| 219 | S | A | -1.4239 | |
| 220 | C | A | 0.0000 | |
| 221 | D | A | -1.5606 | |
| 222 | L | A | -0.0670 | |
| 223 | A | A | -0.0281 | |
| 224 | L | A | -0.0387 | |
| 225 | L | A | 0.0000 | |
| 226 | E | A | -0.4217 | |
| 227 | T | A | -0.2310 | |
| 228 | Y | A | 0.0000 | |
| 229 | C | A | -0.6694 | |
| 230 | A | A | -0.7945 | |
| 231 | T | A | -0.6811 | |
| 232 | P | A | -1.1951 | |
| 233 | A | A | -1.3256 | |
| 234 | K | A | -2.3082 | |
| 235 | S | A | -1.9117 | |
| 236 | E | A | -2.0161 | |
| 237 | A | A | -1.0210 | |
| 238 | A | A | -0.9786 | |
| 239 | A | A | -0.6652 | |
| 240 | L | A | -0.3412 | |
| 241 | E | A | -2.2333 | |
| 242 | H | A | -2.5374 | |
| 243 | H | A | -2.7257 | |
| 244 | H | A | -2.9628 | |
| 245 | H | A | -3.0740 | |
| 246 | H | A | -2.6257 | |
| 247 | H | A | -2.1242 |