Project name: pep5

Status: done

Started: 2026-02-25 03:43:06
Settings
Chain sequence(s) A: MKDRCLKYCGICCKECKCVPSGTYGNKHECACYRDKLSSKKTPKCP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:55)
Show buried residues

Minimal score value
-3.1534
Maximal score value
0.4656
Average score
-1.2816
Total score value
-58.9558

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.5413
2 K A -2.2378
3 D A -2.4606
4 R A -1.7494
5 C A 0.0000
6 L A -0.2143
7 K A -1.3034
8 Y A 0.2514
9 C A 0.0000
10 G A -0.0964
11 I A 0.1518
12 C A 0.0000
13 C A -0.5111
14 K A -2.0335
15 E A -2.0697
16 C A -1.3001
17 K A -1.9397
18 C A -0.5853
19 V A -0.3119
20 P A -1.1232
21 S A -0.9323
22 G A -0.4328
23 T A 0.0696
24 Y A 0.4656
25 G A -1.1881
26 N A -2.5927
27 K A -3.0246
28 H A -3.1534
29 E A -2.9071
30 C A -1.8336
31 A A -1.2853
32 C A -0.9413
33 Y A 0.0000
34 R A -2.4844
35 D A -2.5536
36 K A -1.7319
37 L A -1.4756
38 S A -1.7009
39 S A -1.6166
40 K A -2.6821
41 K A -2.8552
42 T A -1.8980
43 P A -1.7819
44 K A -1.5957
45 C A -0.6057
46 P A -0.1437
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Laboratory of Theory of Biopolymers 2018