| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLTLSCTASGFTLDHYDIGWFRQAPGKEREGVSCINNSDDDTYYADSVKGRFTIFMNNAKDTVYLQMNSLKPEDTAIYYCAEARGCKRGSYEYDFWGQGTQVTVSSKKK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:26)
[INFO] Main: Simulation completed successfully. (00:01:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.1555 | |
| 2 | V | A | -0.0880 | |
| 3 | Q | A | -0.5928 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3287 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5263 | |
| 8 | G | A | -0.4971 | |
| 9 | G | A | -0.4586 | |
| 10 | G | A | 0.1312 | |
| 11 | L | A | 1.1841 | |
| 12 | V | A | 0.3474 | |
| 13 | Q | A | -1.6017 | |
| 14 | P | A | -2.0649 | |
| 15 | G | A | -1.3429 | |
| 16 | G | A | -0.6547 | |
| 17 | S | A | -0.6953 | |
| 18 | L | A | -0.0065 | |
| 19 | T | A | -0.3302 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | 0.0701 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.4258 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.4611 | |
| 26 | G | A | -0.6079 | |
| 27 | F | A | -0.2926 | |
| 28 | T | A | -0.9458 | |
| 29 | L | A | 0.0000 | |
| 30 | D | A | -1.9682 | |
| 31 | H | A | -2.0447 | |
| 32 | Y | A | -1.1081 | |
| 33 | D | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.5485 | |
| 39 | Q | A | -2.2782 | |
| 40 | A | A | -2.0690 | |
| 41 | P | A | -1.4389 | |
| 42 | G | A | -2.0001 | |
| 43 | K | A | -3.4685 | |
| 44 | E | A | -3.8426 | |
| 45 | R | A | -3.3528 | |
| 46 | E | A | -2.3639 | |
| 47 | G | A | -1.0625 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | C | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -2.6355 | |
| 53 | N | A | -2.4291 | |
| 54 | S | A | -2.4719 | |
| 55 | D | A | -3.6190 | |
| 56 | D | A | -3.5946 | |
| 57 | D | A | -3.4004 | |
| 58 | T | A | -1.5669 | |
| 59 | Y | A | -1.1831 | |
| 60 | Y | A | -0.8064 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.4358 | |
| 63 | S | A | -1.7854 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5745 | |
| 66 | G | A | -1.7341 | |
| 67 | R | A | -1.3008 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.3677 | |
| 70 | I | A | 0.0000 | |
| 71 | F | A | 0.3762 | |
| 72 | M | A | -0.5056 | |
| 73 | N | A | -1.3833 | |
| 74 | N | A | -2.1357 | |
| 75 | A | A | -1.5504 | |
| 76 | K | A | -2.3506 | |
| 77 | D | A | -1.8922 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.2393 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.3846 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.0385 | |
| 85 | S | A | -1.0813 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -1.9480 | |
| 88 | P | A | -1.8648 | |
| 89 | E | A | -2.2378 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.8552 | |
| 92 | A | A | 0.0000 | |
| 93 | I | A | -0.5552 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | E | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | R | A | -2.5846 | |
| 101 | G | A | -2.1403 | |
| 102 | C | A | -1.6788 | |
| 103 | K | A | -2.7328 | |
| 104 | R | A | -2.6605 | |
| 105 | G | A | -1.8047 | |
| 106 | S | A | -1.3611 | |
| 107 | Y | A | -0.8876 | |
| 108 | E | A | -1.9579 | |
| 109 | Y | A | -1.1700 | |
| 110 | D | A | -1.6603 | |
| 111 | F | A | 0.0587 | |
| 112 | W | A | 0.2881 | |
| 113 | G | A | -0.1390 | |
| 114 | Q | A | -0.9228 | |
| 115 | G | A | -0.6865 | |
| 116 | T | A | 0.0000 | |
| 117 | Q | A | -1.0187 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.1409 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -1.3603 | |
| 122 | S | A | -2.1464 | |
| 123 | K | A | -3.2546 | |
| 124 | K | A | -3.5879 | |
| 125 | K | A | -3.1196 |