Project name: fdeb2236fd1c6d2

Status: done

Started: 2025-08-10 18:48:10
Settings
Chain sequence(s) A: SWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDSRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTE
H: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGIDPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIK
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:58)
Show buried residues

Minimal score value
-4.0426
Maximal score value
1.4957
Average score
-0.684
Total score value
-237.3574

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.4520
2 W A -0.8858
3 N A -1.5818
4 P A -1.4163
5 P A 0.0000
6 T A -0.5864
7 F A 0.0000
8 S A -0.1321
9 P A 0.2200
10 A A 0.2991
11 L A 1.1200
12 L A 1.0807
13 V A 1.4957
14 V A -0.6242
15 T A -1.9597
16 E A -3.4291
17 G A -2.9944
18 D A -2.7436
19 N A -2.6363
20 A A 0.0000
21 T A -0.5621
22 F A 0.0000
23 T A -0.2976
24 C A 0.0000
25 S A -1.0544
26 F A 0.0000
27 S A -1.5815
28 N A -1.4657
29 T A -1.3296
30 S A -1.3876
31 E A -2.0205
32 S A -0.9476
33 F A -0.3871
34 V A 0.0000
35 L A 0.0000
36 N A 0.0000
37 W A 0.0000
38 Y A 0.0000
39 R A -1.7294
40 M A -1.7237
41 S A -1.3405
42 P A -1.0643
43 S A -1.3066
44 N A -2.1646
45 Q A -2.1769
46 T A -1.3626
47 D A -1.2750
48 K A 0.0000
49 L A 0.0000
50 A A 0.0000
51 A A 0.0000
52 F A -0.2220
53 P A 0.0000
54 E A -1.6768
55 D A 0.0000
56 R A -2.5214
57 S A 0.0000
58 Q A -1.3966
59 P A 0.0000
60 G A -1.7337
61 Q A -2.2307
62 D A -2.2654
63 S A -1.5888
64 R A -1.3505
65 F A -1.0910
66 R A -1.1028
67 V A -0.5420
68 T A -0.5838
69 Q A -1.0425
70 L A -0.9191
71 P A -1.1510
72 N A -1.9584
73 G A -1.9590
74 R A -2.3728
75 D A -1.4778
76 F A 0.0000
77 H A -0.5347
78 M A 0.0000
79 S A -0.8775
80 V A 0.0000
81 V A -1.7034
82 R A -3.1658
83 A A 0.0000
84 R A -4.0426
85 R A -3.5229
86 N A -2.6957
87 D A 0.0000
88 S A -1.7451
89 G A -1.4396
90 T A -1.4354
91 Y A 0.0000
92 L A 0.0000
93 C A 0.0000
94 G A 0.0000
95 A A 0.0000
96 I A 0.0000
97 S A -0.4554
98 L A 0.0000
99 A A -0.5074
100 P A -1.0368
101 K A -1.9966
102 A A -1.2904
103 Q A -1.3993
104 I A -0.9311
105 K A -1.4349
106 E A -1.7207
107 S A -0.6891
108 L A 0.2720
109 R A -1.4957
110 A A 0.0000
111 E A -1.1666
112 L A 0.0000
113 R A -1.4739
114 V A 0.0000
115 T A -1.9558
116 E A -2.5219
117 Q H -1.2542
118 V H -0.4430
119 Q H -0.9353
120 L H 0.0000
121 V H -0.1882
122 Q H 0.0000
123 S H -0.4075
124 G H 0.0765
125 V H 1.3361
126 E H 0.3103
127 V H 0.9736
128 K H -0.7511
129 K H -1.7707
130 P H -1.3737
131 G H -1.3136
132 A H -1.2917
133 S H -1.5675
134 V H 0.0000
135 K H -1.9709
136 V H 0.0000
137 S H -0.6198
138 C H 0.0000
139 K H -0.8525
140 A H 0.0000
141 S H -0.6730
142 G H -0.8247
143 Y H -0.2859
144 T H -0.2128
145 F H 0.0000
146 T H -0.6229
147 N H -0.6422
148 Y H -0.2359
149 Y H 0.0000
150 M H 0.0000
151 Y H 0.0000
152 W H 0.0000
153 V H 0.0000
154 R H 0.0000
155 Q H -0.4925
156 A H -0.6459
157 P H -0.9583
158 G H -0.8795
159 Q H -1.1095
160 G H 0.0000
161 L H 0.0000
162 E H -1.0631
163 W H 0.0000
164 M H 0.0000
165 G H 0.0000
166 G H 0.0000
167 I H 0.0000
168 D H 0.0000
169 P H -0.8156
170 S H -1.1075
171 N H -1.6158
172 G H -1.1344
173 G H -1.1990
174 T H -0.5867
175 N H -0.5712
176 F H -0.9399
177 N H 0.0000
178 E H -3.1771
179 K H -3.2511
180 F H -2.4537
181 K H -3.2569
182 N H -2.9161
183 R H -2.2050
184 V H 0.0000
185 T H -0.9230
186 L H -0.1656
187 T H -0.3484
188 T H -0.6561
189 D H -0.9601
190 S H -0.6946
191 S H -0.5484
192 T H -0.5805
193 T H -0.6404
194 T H 0.0000
195 A H 0.0000
196 Y H -0.4740
197 M H 0.0000
198 E H -1.5027
199 L H 0.0000
200 K H -1.8740
201 S H -1.5758
202 L H 0.0000
203 Q H -1.3249
204 F H 0.2329
205 D H -1.2288
206 D H 0.0000
207 T H -0.1297
208 A H -0.0002
209 V H 0.3630
210 Y H 0.0000
211 Y H 0.0000
212 C H 0.0000
213 A H 0.0000
214 R H 0.0000
215 R H 0.0000
216 D H -0.4849
217 Y H 0.0000
218 R H -0.4964
219 F H 0.0000
220 D H 0.0000
221 M H 0.0739
222 G H 0.0000
223 F H 0.0000
224 D H -0.3860
225 Y H 0.0504
226 W H 0.0000
227 G H 0.0000
228 Q H -1.1686
229 G H -0.3608
230 T H 0.0000
231 T H 0.5301
232 V H 0.0000
233 T H 0.5199
234 V H 0.0000
235 S H -0.2907
236 S H -0.5933
237 E L -1.5969
238 I L -0.3222
239 V L 0.4308
240 L L 0.0000
241 T L -0.5727
242 Q L -0.9129
243 S L -0.6970
244 P L -0.3632
245 A L -0.3222
246 T L -0.4226
247 L L -0.2333
248 S L -0.3522
249 L L -0.6522
250 S L -0.9486
251 P L -1.3956
252 G L -1.7281
253 E L -2.2289
254 R L -2.5372
255 A L 0.0000
256 T L -0.5249
257 L L 0.0000
258 S L -1.0066
259 C L 0.0000
260 R L -2.3643
261 A L 0.0000
262 S L -1.3665
263 K L -2.0780
264 G L -1.2718
265 V L 0.0000
266 S L -0.7754
267 T L -0.5963
268 S L -0.6972
269 G L -1.0421
270 Y L -0.7096
271 S L -0.5514
272 Y L 0.0000
273 L L 0.0000
274 H L 0.0000
275 W L 0.0000
276 Y L 0.0000
277 Q L 0.0000
278 Q L 0.0000
279 K L -1.6283
280 P L -1.1367
281 G L -1.3672
282 Q L -2.0180
283 A L -1.3094
284 P L 0.0000
285 R L -1.3756
286 L L 0.0000
287 L L 0.0000
288 I L 0.0000
289 Y L 0.0000
290 L L 0.0000
291 A L -0.1550
292 S L -0.1761
293 Y L 0.3280
294 L L 0.3227
295 E L -0.5007
296 S L -0.7235
297 G L -0.4787
298 V L -0.2430
299 P L -0.2021
300 A L -0.1498
301 R L -0.7407
302 F L 0.0000
303 S L -0.2236
304 G L -0.2972
305 S L -0.8074
306 G L -1.3293
307 S L -1.2379
308 G L -1.6213
309 T L -2.0247
310 D L -2.9298
311 F L 0.0000
312 T L -1.0031
313 L L 0.0000
314 T L -0.6088
315 I L 0.0000
316 S L -1.4488
317 S L -1.7917
318 L L 0.0000
319 E L -2.1679
320 P L -1.4606
321 E L -2.4072
322 D L 0.0000
323 F L 0.0000
324 A L 0.0000
325 V L 0.0000
326 Y L 0.0000
327 Y L 0.0000
328 C L 0.0000
329 Q L 0.0000
330 H L 0.0000
331 S L 0.0000
332 R L 0.0000
333 D L -0.7962
334 L L -0.3477
335 P L -0.6987
336 L L 0.0000
337 T L -0.0921
338 F L 0.0000
339 G L -0.3641
340 G L -0.5397
341 G L 0.0000
342 T L 0.0000
343 K L -0.9543
344 V L 0.0000
345 E L -0.4915
346 I L 0.7337
347 K L -0.9413
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Laboratory of Theory of Biopolymers 2018