Project name: GP41 Intein [mutate: LV91A]

Status: done

Started: 2026-07-17 16:59:51
Settings
Chain sequence(s) A: SGGALDLKTQVQTPQGMKEISNIQVGDLVLSNTGYNEVLNVFPKSKKKSYKITLEDGKEIICSEEHLFPTQTGEMNISGGLKEGMCLYVKEMMLKKILKIEELDERELIDIEVSGNHLFYANDILTHN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LV91A
Energy difference between WT (input) and mutated protein (by FoldX) 1.74113 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:41)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:45)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:22)
Show buried residues

Minimal score value
-3.8259
Maximal score value
0.7742
Average score
-0.9688
Total score value
-124.0056

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
-2 S A -0.5499
-1 G A -0.6279
0 G A 0.0000
1 A A 0.0000
2 L A 0.0000
3 D A 0.0000
4 L A -1.5702
5 K A -2.3316
6 T A 0.0000
7 Q A -1.9278
8 V A 0.0000
9 Q A -0.7727
10 T A 0.0000
11 P A -0.7406
12 Q A -1.3792
13 G A -0.7766
14 M A -0.5030
15 K A -1.6406
16 E A -2.3484
17 I A 0.0000
18 S A -1.7343
19 N A -2.1726
20 I A 0.0000
21 Q A -0.8537
22 V A 0.7742
23 G A -0.2595
24 D A -0.8229
25 L A -0.3484
26 V A 0.0000
27 L A -0.0889
28 S A 0.0000
29 N A -0.9517
30 T A -0.4298
31 G A -0.2452
32 Y A 0.0413
33 N A 0.0000
34 E A -1.2054
35 V A 0.0000
36 L A 0.3315
37 N A -0.1956
38 V A 0.1225
39 F A 0.0040
40 P A -0.9864
41 K A -2.2721
42 S A -2.4655
43 K A -3.6433
44 K A -2.8856
45 K A -2.7284
46 S A 0.0000
47 Y A -1.9133
48 K A -1.7526
49 I A 0.0000
50 T A -2.1183
51 L A 0.0000
52 E A -2.3876
53 D A -2.1276
54 G A -1.7818
55 K A -2.1304
56 E A -2.2035
57 I A 0.0000
58 I A -0.7366
59 C A 0.0000
60 S A 0.0000
61 E A -1.0313
62 E A -0.9328
63 H A 0.0000
64 L A -0.5941
65 F A 0.0000
66 P A -1.0145
67 T A 0.0000
68 Q A -1.3550
69 T A -1.0823
70 G A -1.4194
71 E A -2.0644
72 M A -1.3164
73 N A -1.0376
74 I A -0.6395
75 S A -0.8391
76 G A -1.1063
77 G A -1.0533
78 L A 0.0000
79 K A -2.8200
80 E A -2.9887
81 G A -2.0138
82 M A -1.2181
83 C A -0.7902
84 L A 0.0000
85 Y A -0.1314
86 V A 0.0000
87 K A -1.9812
88 E A -2.0430
89 M A -0.2114
90 M A 0.6351
91 V A 0.5693 mutated: LV91A
92 K A -0.5086
93 K A -1.9829
94 I A 0.0000
95 L A -1.6908
96 K A -2.9573
97 I A -2.4365
98 E A -2.9116
99 E A -3.1076
100 L A -2.1541
101 D A -3.3468
102 E A -3.8259
103 R A -3.1153
104 E A -3.1851
105 L A 0.0000
106 I A 0.0000
107 D A 0.0000
108 I A 0.0000
109 E A -0.5833
110 V A 0.0000
111 S A -0.8821
112 G A -1.0605
113 N A -0.9876
114 H A -1.2165
115 L A 0.0000
116 F A 0.0000
117 Y A 0.0000
118 A A 0.0000
119 N A -1.6432
120 D A -1.9665
121 I A 0.0000
122 L A 0.0000
123 T A 0.0000
124 H A -0.6280
125 N A 0.0000
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018