Project name: HHB17

Status: done

Started: 2025-06-23 04:56:55
Settings
Chain sequence(s) A: QRVEQSPSSLSASVGDRVTITCVLKGSSCASFSTYWYFTKPGATKKASLSTGGRYSDTKNKASKSFTLTISSLQPEDFATYYCEAYSFRIYSWEAGDCSGSYEGGGTKVEIK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:33)
Show buried residues

Minimal score value
-3.0604
Maximal score value
1.6259
Average score
-0.7216
Total score value
-80.8145

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.1429
2 R A -3.0604
3 V A 0.0000
4 E A -1.9479
5 Q A -1.2067
6 S A -0.8133
7 P A -0.7911
8 S A -1.0107
9 S A -1.3026
10 L A -0.8776
11 S A -1.1520
12 A A 0.0000
13 S A -0.1562
14 V A 0.6186
15 G A -0.4484
16 D A -1.3716
17 R A -2.1663
18 V A 0.0000
19 T A -0.6486
20 I A 0.0000
21 T A -0.3962
22 C A 0.0000
23 V A -1.0108
24 L A 0.0000
25 K A -2.2309
26 G A -1.6623
27 S A -1.4391
28 S A -1.1423
29 C A 0.0000
30 A A -0.3434
31 S A -0.1291
32 F A 0.0000
33 S A 0.1461
34 T A -0.1071
35 Y A 0.2573
36 W A 0.0000
37 Y A 0.0224
38 F A -0.3978
39 T A -1.2261
40 K A -1.6557
41 P A -0.9217
42 G A -0.9702
43 A A -1.2096
44 T A -1.4113
45 K A -2.3790
46 K A -1.9031
47 A A -0.9201
48 S A -0.3298
49 L A 0.0611
50 S A -0.3238
51 T A -0.5958
52 G A -0.9314
53 G A -0.9441
54 R A -1.0804
55 Y A -0.5855
56 S A -0.7338
57 D A -0.8875
58 T A -1.2863
59 K A -2.1905
60 N A -2.5774
61 K A -2.6856
62 A A -1.4349
63 S A -1.3976
64 K A -1.7007
65 S A -1.4181
66 F A 0.0000
67 T A -0.6569
68 L A 0.0000
69 T A -0.6966
70 I A 0.0000
71 S A -1.3152
72 S A -0.9814
73 L A 0.0000
74 Q A -0.9189
75 P A -0.9148
76 E A -2.0164
77 D A 0.0000
78 F A 0.0000
79 A A 0.0000
80 T A 0.0000
81 Y A 0.0000
82 Y A -0.4214
83 C A 0.0000
84 E A -0.8200
85 A A 0.0000
86 Y A 0.2192
87 S A 0.0000
88 F A -0.1345
89 R A -0.6961
90 I A 1.6259
91 Y A 1.4164
92 S A 0.7057
93 W A 1.2113
94 E A 0.1392
95 A A -0.5168
96 G A -1.5142
97 D A -2.3374
98 C A 0.0000
99 S A -0.8033
100 G A -0.8051
101 S A -0.5042
102 Y A -1.4663
103 E A -2.0878
104 G A 0.0000
105 G A -1.4559
106 G A 0.0000
107 T A 0.0000
108 K A -2.1382
109 V A 0.0000
110 E A -1.6696
111 I A 0.3383
112 K A -1.0497
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018