Project name: query_structure

Status: done

Started: 2026-03-17 01:15:22
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAVYNVYPGTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGSGVKYVVYRRSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-3.5869
Maximal score value
2.6444
Average score
-0.5207
Total score value
-52.0668

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.3799
2 S A -0.1186
3 D A -0.6872
4 V A -1.0689
5 P A 0.0000
6 R A -3.5574
7 D A -3.5869
8 L A 0.0000
9 E A -2.1496
10 V A 0.0922
11 V A 1.5392
12 A A 0.8915
13 A A 0.2898
14 T A -0.5298
15 P A -1.1236
16 T A -0.9949
17 S A -0.5382
18 L A 0.0000
19 L A 0.7417
20 I A 0.0000
21 S A -1.2140
22 W A 0.0000
23 D A -3.1496
24 A A 0.0000
25 V A -0.5881
26 Y A 0.5957
27 N A -0.1456
28 V A 0.0000
29 Y A 0.8652
30 P A 0.2367
31 G A 0.0000
32 T A -0.3894
33 V A 0.0000
34 R A -2.0556
35 Y A -0.9628
36 Y A 0.0000
37 R A -0.8904
38 I A 0.0000
39 T A -0.6440
40 Y A -0.4037
41 G A 0.0000
42 E A -1.7303
43 T A -1.3780
44 G A -1.2991
45 G A -1.4628
46 N A -1.5596
47 S A -0.9299
48 P A -0.4144
49 V A 0.2757
50 Q A -1.1799
51 E A -1.8122
52 F A -0.7962
53 T A -0.4961
54 V A 0.0000
55 P A -1.1387
56 G A -1.2051
57 S A -1.2409
58 K A -2.2164
59 S A -1.3800
60 T A -0.7713
61 A A 0.0000
62 T A 0.2924
63 I A 0.0000
64 S A -0.6636
65 G A -1.0337
66 L A 0.0000
67 K A -2.4204
68 P A -1.7071
69 G A -1.5291
70 V A -1.5794
71 D A -2.4270
72 Y A 0.0000
73 T A -0.8489
74 I A 0.0000
75 T A 0.0000
76 V A 0.0000
77 Y A 0.4271
78 A A 0.1038
79 V A 0.0808
80 T A -0.1744
81 G A -0.4308
82 S A 0.2590
83 G A 0.2076
84 V A 1.4554
85 K A 0.1298
86 Y A 2.0496
87 V A 2.6444
88 V A 1.8097
89 Y A 1.4924
90 R A -0.6861
91 R A -0.6811
92 S A -0.4223
93 P A -0.2097
94 I A -0.3640
95 S A -0.5966
96 I A -0.6781
97 N A -1.7969
98 Y A -1.5851
99 R A -2.6882
100 T A -1.5947
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Laboratory of Theory of Biopolymers 2018