Project name: fec8a6cf57e19e9

Status: done

Started: 2026-02-12 14:50:42
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Chain sequence(s) A: KGHKGHK
C: KGHKGHK
B: KGHKGHK
E: KGHKGHK
D: KGHKGHK
G: KGHKGHK
F: KGHKGHK
I: KGHKGHK
H: KGHKGHK
K: KGHKGHK
J: KGHKGHK
M: KGHKGHK
L: KGHKGHK
O: KGHKGHK
N: KGHKGHK
Q: KGHKGHK
P: KGHKGHK
S: KGHKGHK
R: KGHKGHK
T: KGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:21:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:21:47)
Show buried residues

Minimal score value
-3.8017
Maximal score value
0.0
Average score
-2.0741
Total score value
-290.3738

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.6124
2 G A -2.3165
3 H A -2.0232
4 K A -1.9515
5 G A 0.0000
6 H A 0.0000
7 K A -3.2133
1 K B -3.6911
2 G B -2.7317
3 H B -2.4225
4 K B -2.6565
5 G B 0.0000
6 H B 0.0000
7 K B -2.8598
1 K C -3.1820
2 G C -2.6484
3 H C -2.9443
4 K C -3.4921
5 G C -2.8853
6 H C -2.9016
7 K C -3.0425
1 K D -3.1389
2 G D -2.5530
3 H D -3.0079
4 K D -3.3420
5 G D -2.7453
6 H D -2.9571
7 K D -3.2320
1 K E -3.3670
2 G E -2.6856
3 H E -2.4765
4 K E -2.7038
5 G E 0.0000
6 H E 0.0000
7 K E -3.2103
1 K F -3.3866
2 G F -2.2815
3 H F -1.8257
4 K F -1.9602
5 G F 0.0000
6 H F 0.0000
7 K F -2.9614
1 K G -3.1877
2 G G -2.2522
3 H G -1.7473
4 K G -1.8458
5 G G 0.0000
6 H G 0.0000
7 K G -3.1006
1 K H -3.1952
2 G H -2.2829
3 H H -1.7645
4 K H -1.9177
5 G H 0.0000
6 H H 0.0000
7 K H -3.0995
1 K I -3.2048
2 G I -2.3046
3 H I -1.7677
4 K I -1.8426
5 G I 0.0000
6 H I 0.0000
7 K I -3.1027
1 K J -3.2174
2 G J -2.3110
3 H J -1.7723
4 K J -1.8512
5 G J 0.0000
6 H J 0.0000
7 K J -3.1307
1 K K -3.4242
2 G K -2.4243
3 H K -1.9071
4 K K -2.0757
5 G K 0.0000
6 H K 0.0000
7 K K -3.3043
1 K L -3.4658
2 G L -2.6442
3 H L -2.1911
4 K L -2.6135
5 G L 0.0000
6 H L 0.0000
7 K L -3.1219
1 K M -3.0660
2 G M -2.2991
3 H M -2.1297
4 K M -2.6055
5 G M -2.4898
6 H M -2.4085
7 K M -2.9289
1 K N -3.2158
2 G N -2.5192
3 H N -2.7030
4 K N -3.2890
5 G N -2.6201
6 H N -2.5745
7 K N -3.0806
1 K O -3.8017
2 G O -2.7840
3 H O -2.4600
4 K O -2.9241
5 G O 0.0000
6 H O 0.0000
7 K O -3.4469
1 K P -3.6755
2 G P -2.4379
3 H P -1.8800
4 K P -2.3086
5 G P 0.0000
6 H P 0.0000
7 K P -3.2746
1 K Q -3.6266
2 G Q -2.3233
3 H Q -1.8006
4 K Q -2.0928
5 G Q 0.0000
6 H Q 0.0000
7 K Q -3.2155
1 K R -3.6326
2 G R -2.2692
3 H R -1.6854
4 K R -1.8096
5 G R 0.0000
6 H R 0.0000
7 K R -2.8493
1 K S -3.6582
2 G S -2.2819
3 H S -1.7421
4 K S -1.8859
5 G S 0.0000
6 H S 0.0000
7 K S -3.1474
1 K T -3.6592
2 G T -2.3172
3 H T -1.7884
4 K T -2.0036
5 G T 0.0000
6 H T 0.0000
7 K T -3.1820
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Laboratory of Theory of Biopolymers 2018