Project name: query_structure

Status: done

Started: 2026-03-16 23:45:43
Settings
Chain sequence(s) A: CGESCFLGTCYTKGCSCGEWKLCYGTNGGTIFD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:10)
Show buried residues

Minimal score value
-1.6129
Maximal score value
2.4784
Average score
0.0971
Total score value
3.2038

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A -0.2462
2 G A -0.4171
3 E A 0.0325
4 S A 0.8679
5 C A 0.0000
6 F A 2.4784
7 L A 2.1793
8 G A 0.8942
9 T A 0.8821
10 C A 0.9568
11 Y A 0.7059
12 T A -0.3679
13 K A -1.6129
14 G A -0.9310
15 C A 0.0000
16 S A -0.6345
17 C A 0.4658
18 G A -0.6202
19 E A -1.5124
20 W A 0.0279
21 K A -0.3890
22 L A 0.6559
23 C A 0.0000
24 Y A 0.2389
25 G A 0.0000
26 T A -0.2448
27 N A -1.1830
28 G A -0.9617
29 G A -0.4914
30 T A 0.4032
31 I A 1.7027
32 F A 0.9164
33 D A -0.5920
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018