Project name: query_structure

Status: done

Started: 2026-03-16 23:50:10
Settings
Chain sequence(s) A: KRFKKFFKKVKKSVKKRLKKIFKKPMVIGVTIPF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:28)
Show buried residues

Minimal score value
-4.5367
Maximal score value
2.3948
Average score
-1.1818
Total score value
-40.1802

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.8291
2 R A -2.5396
3 F A -0.8322
4 K A -2.3665
5 K A -2.2051
6 F A 0.1589
7 F A 0.0215
8 K A -2.4477
9 K A -2.6148
10 V A -1.4437
11 K A -3.4715
12 K A -4.0941
13 S A -3.0801
14 V A -2.9195
15 K A -4.5344
16 K A -4.5367
17 R A -3.9849
18 L A -2.4930
19 K A -3.5068
20 K A -3.2801
21 I A -1.0313
22 F A -0.0995
23 K A -1.3181
24 K A -0.8868
25 P A 0.2547
26 M A 1.2752
27 V A 1.8006
28 I A 2.3948
29 G A 1.0707
30 V A 1.3104
31 T A 1.5377
32 I A 2.3750
33 P A 1.7758
34 F A 2.3600
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Laboratory of Theory of Biopolymers 2018