| Chain sequence(s) |
A: ATCYCRTGRCATRESLSGVCEISGRLYRLCCR
C: ATCYCRTGRCATRESLSGVCEISGRLYRLCCR B: ATCYCRTGRCATRESLSGVCEISGRLYRLCCR D: ATCCYYCCRRTTGRLSGVCEISGRLYRLCCCC input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:08)
[INFO] Main: Simulation completed successfully. (00:01:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -0.4328 | |
| 2 | T | A | -0.4445 | |
| 3 | C | A | -0.1933 | |
| 4 | Y | A | -0.1802 | |
| 5 | C | A | -0.2554 | |
| 6 | R | A | -0.9570 | |
| 7 | T | A | -1.0955 | |
| 8 | G | A | -1.7548 | |
| 9 | R | A | -2.2258 | |
| 10 | C | A | -1.4871 | |
| 11 | A | A | -1.2675 | |
| 12 | T | A | -1.3323 | |
| 13 | R | A | -2.4286 | |
| 14 | E | A | -1.7205 | |
| 15 | S | A | -0.7810 | |
| 16 | L | A | 0.5687 | |
| 17 | S | A | 0.2278 | |
| 18 | G | A | 0.1183 | |
| 19 | V | A | 0.3319 | |
| 20 | C | A | 0.0000 | |
| 21 | E | A | -1.0352 | |
| 22 | I | A | -0.3753 | |
| 23 | S | A | -0.8041 | |
| 24 | G | A | -1.2920 | |
| 25 | R | A | -1.5780 | |
| 26 | L | A | 0.0895 | |
| 27 | Y | A | -0.7334 | |
| 28 | R | A | -1.1370 | |
| 29 | L | A | 0.0000 | |
| 30 | C | A | 0.0000 | |
| 31 | C | A | -0.8931 | |
| 32 | R | A | -2.1451 | |
| 1 | A | C | -0.3875 | |
| 2 | T | C | -0.4219 | |
| 3 | C | C | 0.0000 | |
| 4 | Y | C | 0.0079 | |
| 5 | C | C | 0.0215 | |
| 6 | R | C | -0.9747 | |
| 7 | T | C | -1.1491 | |
| 8 | G | C | -1.5844 | |
| 9 | R | C | -2.2011 | |
| 10 | C | C | 0.0000 | |
| 11 | A | C | -1.3120 | |
| 12 | T | C | -1.4781 | |
| 13 | R | C | -2.5035 | |
| 14 | E | C | -1.9091 | |
| 15 | S | C | -1.0624 | |
| 16 | L | C | 0.1648 | |
| 17 | S | C | -0.0725 | |
| 18 | G | C | -0.2105 | |
| 19 | V | C | 0.3504 | |
| 20 | C | C | 0.0000 | |
| 21 | E | C | -0.5872 | |
| 22 | I | C | 0.0582 | |
| 23 | S | C | -0.7318 | |
| 24 | G | C | -1.4081 | |
| 25 | R | C | -1.9082 | |
| 26 | L | C | -0.6835 | |
| 27 | Y | C | -0.4461 | |
| 28 | R | C | -0.9496 | |
| 29 | L | C | 0.0000 | |
| 30 | C | C | 0.0000 | |
| 31 | C | C | 0.0000 | |
| 32 | R | C | -2.2860 | |
| 1 | A | B | -0.1464 | |
| 2 | T | B | -0.0609 | |
| 3 | C | B | 0.2997 | |
| 4 | Y | B | 0.4379 | |
| 5 | C | B | 0.0200 | |
| 6 | R | B | -0.7336 | |
| 7 | T | B | -0.9814 | |
| 8 | G | B | -1.6673 | |
| 9 | R | B | -2.1961 | |
| 10 | C | B | -1.5259 | |
| 11 | A | B | 0.0000 | |
| 12 | T | B | -1.6320 | |
| 13 | R | B | -2.6119 | |
| 14 | E | B | -1.6538 | |
| 15 | S | B | -0.6633 | |
| 16 | L | B | 0.5281 | |
| 17 | S | B | 0.1002 | |
| 18 | G | B | -0.2046 | |
| 19 | V | B | 0.0767 | |
| 20 | C | B | 0.0000 | |
| 21 | E | B | -1.4611 | |
| 22 | I | B | -0.4508 | |
| 23 | S | B | -0.8748 | |
| 24 | G | B | -1.3691 | |
| 25 | R | B | -1.6768 | |
| 26 | L | B | -0.0794 | |
| 27 | Y | B | 0.0000 | |
| 28 | R | B | -1.2742 | |
| 29 | L | B | 0.0000 | |
| 30 | C | B | 0.0000 | |
| 31 | C | B | -0.5639 | |
| 32 | R | B | -1.5221 | |
| 1 | A | D | 0.2543 | |
| 2 | T | D | 0.6172 | |
| 3 | C | D | 0.0000 | |
| 4 | Y | D | 1.2290 | |
| 5 | C | D | -0.2317 | |
| 6 | R | D | -1.7782 | |
| 7 | T | D | -1.5818 | |
| 8 | G | D | -1.9660 | |
| 9 | R | D | -2.3034 | |
| 16 | L | D | 1.5051 | |
| 17 | S | D | 0.6931 | |
| 18 | G | D | 0.0929 | |
| 19 | V | D | 0.3057 | |
| 20 | C | D | 0.0000 | |
| 21 | E | D | -1.1793 | |
| 22 | I | D | -0.3506 | |
| 23 | S | D | -0.7938 | |
| 24 | G | D | -1.2603 | |
| 25 | R | D | -1.5784 | |
| 26 | L | D | -0.0222 | |
| 27 | Y | D | 0.0000 | |
| 28 | R | D | -0.8694 | |
| 29 | L | D | 0.0000 | |
| 30 | C | D | 0.7109 | |
| 31 | C | D | 1.4614 |