| Chain sequence(s) |
A: FEFEFEGKGH
C: FEFEFEGKGH B: FEFEFEGKGH E: FEFEFEGKGH D: FEFEFEGKGH G: FEFEFEGKGH F: FEFEFEGKGH I: FEFEFEGKGH H: FEFEFEGKGH K: FEFEFEGKGH J: FEFEFEGKGH L: FEFEFEGKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:54)
[INFO] Main: Simulation completed successfully. (00:06:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.4354 | |
| 2 | E | A | -1.6150 | |
| 3 | F | A | 0.0000 | |
| 4 | E | A | -2.3455 | |
| 5 | F | A | 0.0000 | |
| 6 | E | A | -2.0768 | |
| 7 | G | A | 0.0000 | |
| 8 | K | A | -2.4034 | |
| 9 | G | A | 0.0000 | |
| 10 | H | A | -1.4788 | |
| 1 | F | B | 0.2775 | |
| 2 | E | B | -1.7065 | |
| 3 | F | B | 0.0000 | |
| 4 | E | B | -2.5123 | |
| 5 | F | B | 0.0000 | |
| 6 | E | B | -2.2168 | |
| 7 | G | B | 0.0000 | |
| 8 | K | B | -2.2594 | |
| 9 | G | B | 0.0000 | |
| 10 | H | B | -1.4478 | |
| 1 | F | C | 0.3513 | |
| 2 | E | C | -1.6465 | |
| 3 | F | C | 0.0000 | |
| 4 | E | C | -3.0374 | |
| 5 | F | C | 0.0000 | |
| 6 | E | C | -3.1376 | |
| 7 | G | C | 0.0000 | |
| 8 | K | C | -2.9632 | |
| 9 | G | C | 0.0000 | |
| 10 | H | C | -1.6650 | |
| 1 | F | D | 0.9388 | |
| 2 | E | D | -1.7903 | |
| 3 | F | D | 0.0000 | |
| 4 | E | D | -3.1365 | |
| 5 | F | D | 0.0000 | |
| 6 | E | D | -3.4259 | |
| 7 | G | D | -2.8821 | |
| 8 | K | D | -3.4255 | |
| 9 | G | D | -2.0828 | |
| 10 | H | D | -1.6264 | |
| 1 | F | E | 0.3225 | |
| 2 | E | E | -1.7413 | |
| 3 | F | E | -1.3146 | |
| 4 | E | E | -2.2770 | |
| 5 | F | E | -1.5943 | |
| 6 | E | E | -2.9540 | |
| 7 | G | E | -3.0483 | |
| 8 | K | E | -3.4184 | |
| 9 | G | E | -2.5265 | |
| 10 | H | E | -1.6124 | |
| 1 | F | F | 0.4632 | |
| 2 | E | F | -1.4608 | |
| 3 | F | F | 0.0000 | |
| 4 | E | F | -2.2126 | |
| 5 | F | F | 0.0000 | |
| 6 | E | F | -2.2824 | |
| 7 | G | F | 0.0000 | |
| 8 | K | F | -2.4601 | |
| 9 | G | F | 0.0000 | |
| 10 | H | F | -1.2561 | |
| 1 | F | G | 0.6509 | |
| 2 | E | G | -1.3896 | |
| 3 | F | G | 0.0000 | |
| 4 | E | G | -2.9942 | |
| 5 | F | G | 0.0000 | |
| 6 | E | G | -2.7452 | |
| 7 | G | G | 0.0000 | |
| 8 | K | G | -2.2367 | |
| 9 | G | G | 0.0000 | |
| 10 | H | G | -1.5313 | |
| 1 | F | H | 0.5384 | |
| 2 | E | H | -1.3224 | |
| 3 | F | H | 0.0000 | |
| 4 | E | H | -2.2656 | |
| 5 | F | H | 0.0000 | |
| 6 | E | H | -2.3578 | |
| 7 | G | H | 0.0000 | |
| 8 | K | H | -2.6411 | |
| 9 | G | H | 0.0000 | |
| 10 | H | H | -1.4768 | |
| 1 | F | I | 0.4021 | |
| 2 | E | I | -1.8002 | |
| 3 | F | I | 0.0000 | |
| 4 | E | I | -3.1446 | |
| 5 | F | I | 0.0000 | |
| 6 | E | I | -3.0809 | |
| 7 | G | I | 0.0000 | |
| 8 | K | I | -2.5162 | |
| 9 | G | I | 0.0000 | |
| 10 | H | I | -1.4643 | |
| 1 | F | J | 0.5352 | |
| 2 | E | J | -1.6933 | |
| 3 | F | J | -1.7222 | |
| 4 | E | J | -2.4267 | |
| 5 | F | J | -1.8778 | |
| 6 | E | J | -3.1152 | |
| 7 | G | J | -3.0807 | |
| 8 | K | J | -3.5128 | |
| 9 | G | J | -2.6316 | |
| 10 | H | J | -1.7243 | |
| 1 | F | K | 0.9595 | |
| 2 | E | K | -1.7075 | |
| 3 | F | K | 0.0000 | |
| 4 | E | K | -3.0502 | |
| 5 | F | K | 0.0000 | |
| 6 | E | K | -3.3582 | |
| 7 | G | K | -2.8123 | |
| 8 | K | K | -3.2882 | |
| 9 | G | K | -2.0864 | |
| 10 | H | K | -1.7424 | |
| 1 | F | L | 0.0996 | |
| 2 | E | L | -1.6500 | |
| 3 | F | L | 0.0000 | |
| 4 | E | L | -2.7682 | |
| 5 | F | L | 0.0000 | |
| 6 | E | L | -2.9481 | |
| 7 | G | L | 0.0000 | |
| 8 | K | L | -2.8645 | |
| 9 | G | L | 0.0000 | |
| 10 | H | L | -1.5876 |