| Chain sequence(s) |
A: NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP
C: SSSQVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALITVNGHTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAAAWGYAWPLHQDDYWYWGQGTQVTVS B: QVQLVESGGGLVQAGGSLRLSCAASGFPVYRDRMAWYRQAPGKEREWVAAIYSAGQQTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDVGHHYEYYDYWGQGTQVTVS input PDB |
| Selected Chain(s) | A,C,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:11:07)
[INFO] Main: Simulation completed successfully. (00:11:14)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 334 | N | A | -0.6533 | |
| 335 | L | A | 0.7648 | |
| 336 | C | A | 0.0000 | |
| 337 | P | A | -0.7091 | |
| 338 | F | A | 0.0000 | |
| 339 | G | A | -1.7844 | |
| 340 | E | A | -2.5262 | |
| 341 | V | A | 0.0000 | |
| 342 | F | A | 0.0000 | |
| 343 | N | A | -2.2537 | |
| 344 | A | A | -1.8779 | |
| 345 | T | A | -1.3274 | |
| 346 | R | A | -1.8766 | |
| 347 | F | A | 0.0000 | |
| 348 | A | A | -0.9200 | |
| 349 | S | A | 0.0000 | |
| 350 | V | A | 0.0000 | |
| 351 | Y | A | 0.2046 | |
| 352 | A | A | -0.0686 | |
| 353 | W | A | 0.0000 | |
| 354 | N | A | -1.8602 | |
| 355 | R | A | -1.8739 | |
| 356 | K | A | -2.2085 | |
| 357 | R | A | -2.2845 | |
| 358 | I | A | 0.0000 | |
| 359 | S | A | -1.2443 | |
| 360 | N | A | -1.2607 | |
| 361 | C | A | 0.0000 | |
| 362 | V | A | 0.2513 | |
| 363 | A | A | 0.0000 | |
| 364 | D | A | -0.0215 | |
| 365 | Y | A | 0.0000 | |
| 366 | S | A | 0.1529 | |
| 367 | V | A | 1.2656 | |
| 368 | L | A | 0.4709 | |
| 369 | Y | A | 0.0000 | |
| 370 | N | A | -0.4540 | |
| 371 | S | A | -0.1414 | |
| 372 | A | A | -0.2780 | |
| 373 | S | A | -0.3916 | |
| 374 | F | A | 0.0000 | |
| 375 | S | A | -0.1272 | |
| 376 | T | A | 0.0000 | |
| 377 | F | A | 0.0000 | |
| 378 | K | A | -0.1242 | |
| 379 | C | A | 0.0000 | |
| 380 | Y | A | -0.2516 | |
| 381 | G | A | -0.5605 | |
| 382 | V | A | -0.1391 | |
| 383 | S | A | -0.3557 | |
| 384 | P | A | 0.0000 | |
| 385 | T | A | -0.8036 | |
| 386 | K | A | -1.7904 | |
| 387 | L | A | 0.0000 | |
| 388 | N | A | -1.6212 | |
| 389 | D | A | -2.1273 | |
| 390 | L | A | -0.6679 | |
| 391 | C | A | 0.4235 | |
| 392 | F | A | 0.0000 | |
| 393 | T | A | 0.0000 | |
| 394 | N | A | -0.3185 | |
| 395 | V | A | 0.0000 | |
| 396 | Y | A | -0.9863 | |
| 397 | A | A | 0.0000 | |
| 398 | D | A | 0.0000 | |
| 399 | S | A | 0.0000 | |
| 400 | F | A | 0.0000 | |
| 401 | V | A | 0.0000 | |
| 402 | I | A | 0.0000 | |
| 403 | R | A | 0.0000 | |
| 404 | G | A | -0.3932 | |
| 405 | D | A | -0.9780 | |
| 406 | E | A | 0.0000 | |
| 407 | V | A | -0.4031 | |
| 408 | R | A | -1.0902 | |
| 409 | Q | A | -0.9614 | |
| 410 | I | A | 0.0000 | |
| 411 | A | A | -0.7105 | |
| 412 | P | A | -1.5489 | |
| 413 | G | A | -1.5302 | |
| 414 | Q | A | -1.3060 | |
| 415 | T | A | -0.9704 | |
| 416 | G | A | -0.7527 | |
| 417 | K | A | -1.0027 | |
| 418 | I | A | 0.0000 | |
| 419 | A | A | 0.0000 | |
| 420 | D | A | -1.4121 | |
| 421 | Y | A | -1.1920 | |
| 422 | N | A | 0.0000 | |
| 423 | Y | A | 0.0000 | |
| 424 | K | A | -1.5289 | |
| 425 | L | A | 0.0000 | |
| 426 | P | A | -1.9916 | |
| 427 | D | A | -2.9480 | |
| 428 | D | A | -2.7951 | |
| 429 | F | A | 0.0000 | |
| 430 | T | A | -0.5708 | |
| 431 | G | A | 0.0000 | |
| 432 | C | A | 0.0000 | |
| 433 | V | A | 0.0000 | |
| 434 | I | A | 0.0000 | |
| 435 | A | A | 0.0000 | |
| 436 | W | A | -0.2317 | |
| 437 | N | A | -0.6267 | |
| 438 | S | A | 0.0000 | |
| 439 | N | A | -1.0829 | |
| 440 | N | A | -1.1869 | |
| 441 | L | A | -0.1362 | |
| 442 | D | A | 0.0000 | |
| 443 | S | A | -0.8789 | |
| 444 | K | A | -1.2734 | |
| 445 | V | A | 0.5582 | |
| 446 | G | A | -0.3089 | |
| 447 | G | A | 0.0000 | |
| 448 | N | A | -0.8321 | |
| 449 | Y | A | 0.0000 | |
| 450 | N | A | -1.2512 | |
| 451 | Y | A | 0.0000 | |
| 452 | L | A | 0.0000 | |
| 453 | Y | A | 0.0000 | |
| 454 | R | A | 0.0000 | |
| 455 | L | A | 0.2793 | |
| 456 | F | A | -0.1823 | |
| 457 | R | A | -1.2803 | |
| 458 | K | A | -2.0742 | |
| 459 | S | A | -1.7813 | |
| 460 | N | A | -2.3309 | |
| 461 | L | A | 0.0000 | |
| 462 | K | A | -2.4378 | |
| 463 | P | A | -1.7002 | |
| 464 | F | A | -0.8561 | |
| 465 | E | A | -1.5613 | |
| 466 | R | A | -1.5711 | |
| 467 | D | A | -0.0258 | |
| 468 | I | A | 1.1883 | |
| 469 | S | A | -0.0000 | |
| 470 | T | A | -0.8292 | |
| 471 | E | A | -1.9303 | |
| 472 | I | A | 0.0000 | |
| 473 | Y | A | -0.6037 | |
| 474 | Q | A | -1.1756 | |
| 475 | A | A | -0.3439 | |
| 476 | G | A | -0.2580 | |
| 477 | S | A | -0.5249 | |
| 478 | T | A | -0.4025 | |
| 479 | P | A | -0.8616 | |
| 480 | C | A | -0.7681 | |
| 481 | N | A | -1.7830 | |
| 482 | G | A | -1.0439 | |
| 483 | V | A | -0.2243 | |
| 484 | E | A | 0.0000 | |
| 485 | G | A | 0.3699 | |
| 486 | F | A | 1.5928 | |
| 487 | N | A | 0.4919 | |
| 488 | C | A | 0.0000 | |
| 489 | Y | A | 0.6011 | |
| 490 | F | A | 0.0000 | |
| 491 | P | A | 0.0000 | |
| 492 | L | A | 0.0000 | |
| 493 | Q | A | 0.0000 | |
| 494 | S | A | 0.0000 | |
| 495 | Y | A | 0.0000 | |
| 496 | G | A | 0.0000 | |
| 497 | F | A | 0.0000 | |
| 498 | Q | A | -0.7238 | |
| 499 | P | A | -0.4409 | |
| 500 | T | A | -0.0697 | |
| 501 | N | A | -0.1595 | |
| 502 | G | A | 0.2336 | |
| 503 | V | A | 1.2234 | |
| 504 | G | A | 0.0691 | |
| 505 | Y | A | 0.0000 | |
| 506 | Q | A | 0.0000 | |
| 507 | P | A | 0.0000 | |
| 508 | Y | A | -0.3033 | |
| 509 | R | A | 0.0000 | |
| 510 | V | A | 0.0000 | |
| 511 | V | A | 0.0000 | |
| 512 | V | A | 0.0000 | |
| 513 | L | A | 0.0000 | |
| 514 | S | A | -0.0913 | |
| 515 | F | A | 0.0000 | |
| 516 | E | A | 0.7885 | |
| 517 | L | A | 1.9297 | |
| 518 | L | A | 1.6778 | |
| 519 | H | A | 0.0621 | |
| 520 | A | A | 0.1366 | |
| 521 | P | A | 0.0127 | |
| 522 | A | A | 0.1449 | |
| 523 | T | A | -0.4553 | |
| 524 | V | A | 0.0000 | |
| 525 | C | A | -0.0297 | |
| 526 | G | A | -0.5699 | |
| 527 | P | A | -0.4667 | |
| 1 | Q | B | -1.5167 | |
| 2 | V | B | -1.0811 | |
| 3 | Q | B | -1.2081 | |
| 4 | L | B | 0.0000 | |
| 5 | V | B | 0.3242 | |
| 6 | E | B | 0.0000 | |
| 7 | S | B | -0.7100 | |
| 8 | G | B | -1.1017 | |
| 9 | G | B | -0.7496 | |
| 10 | G | B | 0.1654 | |
| 11 | L | B | 1.0467 | |
| 12 | V | B | 0.0305 | |
| 13 | Q | B | -1.1853 | |
| 14 | A | B | -1.3231 | |
| 15 | G | B | -1.2758 | |
| 16 | G | B | -0.8729 | |
| 17 | S | B | -1.0485 | |
| 18 | L | B | -0.8181 | |
| 19 | R | B | -1.8433 | |
| 20 | L | B | 0.0000 | |
| 21 | S | B | -0.4315 | |
| 22 | C | B | 0.0000 | |
| 23 | A | B | -0.3100 | |
| 24 | A | B | 0.0000 | |
| 25 | S | B | -0.9923 | |
| 26 | G | B | -1.1738 | |
| 27 | F | B | 0.0000 | |
| 28 | P | B | -0.2433 | |
| 29 | V | B | 0.0000 | |
| 30 | Y | B | 0.5924 | |
| 31 | R | B | 0.0000 | |
| 32 | D | B | 0.0000 | |
| 33 | R | B | 0.0000 | |
| 34 | M | B | 0.0000 | |
| 35 | A | B | 0.0000 | |
| 36 | W | B | 0.0000 | |
| 37 | Y | B | -0.1303 | |
| 38 | R | B | 0.0000 | |
| 39 | Q | B | -1.8499 | |
| 40 | A | B | -1.8840 | |
| 41 | P | B | -1.3850 | |
| 42 | G | B | -1.9162 | |
| 43 | K | B | -3.2109 | |
| 44 | E | B | -3.3710 | |
| 45 | R | B | -2.3788 | |
| 46 | E | B | -1.6018 | |
| 47 | W | B | 0.0000 | |
| 48 | V | B | 0.0000 | |
| 49 | A | B | 0.0000 | |
| 50 | A | B | 0.0000 | |
| 51 | I | B | 0.0000 | |
| 52 | Y | B | 0.0000 | |
| 53 | S | B | -0.5819 | |
| 54 | A | B | -0.6806 | |
| 55 | G | B | -1.3930 | |
| 56 | Q | B | -2.2229 | |
| 57 | Q | B | -1.9196 | |
| 58 | T | B | -0.9902 | |
| 59 | R | B | 0.0000 | |
| 60 | Y | B | -0.9187 | |
| 61 | A | B | -1.5773 | |
| 62 | D | B | -2.5964 | |
| 63 | S | B | -1.8785 | |
| 64 | V | B | 0.0000 | |
| 65 | K | B | -2.6732 | |
| 66 | G | B | -1.8755 | |
| 67 | R | B | -1.4457 | |
| 68 | F | B | 0.0000 | |
| 69 | T | B | -0.8569 | |
| 70 | I | B | 0.0000 | |
| 71 | S | B | -0.4890 | |
| 72 | R | B | -0.8354 | |
| 73 | D | B | -1.5156 | |
| 74 | N | B | -1.8622 | |
| 75 | A | B | -1.6367 | |
| 76 | K | B | -2.3578 | |
| 77 | N | B | -1.6135 | |
| 78 | T | B | 0.0000 | |
| 79 | V | B | 0.0000 | |
| 80 | Y | B | -0.5817 | |
| 81 | L | B | 0.0000 | |
| 82 | Q | B | -1.1695 | |
| 83 | M | B | 0.0000 | |
| 84 | N | B | -1.5678 | |
| 85 | S | B | -1.2390 | |
| 86 | L | B | 0.0000 | |
| 87 | K | B | -1.9745 | |
| 88 | P | B | -1.7103 | |
| 89 | E | B | -2.2213 | |
| 90 | D | B | 0.0000 | |
| 91 | T | B | -0.9105 | |
| 92 | A | B | 0.0000 | |
| 93 | V | B | -0.5718 | |
| 94 | Y | B | 0.0000 | |
| 95 | Y | B | -0.1144 | |
| 96 | C | B | 0.0000 | |
| 97 | N | B | 0.0000 | |
| 98 | V | B | 0.0000 | |
| 99 | K | B | -0.3992 | |
| 100 | D | B | -0.2259 | |
| 101 | V | B | 0.0000 | |
| 102 | G | B | -0.6434 | |
| 103 | H | B | -1.1441 | |
| 104 | H | B | -1.3421 | |
| 105 | Y | B | -0.3538 | |
| 106 | E | B | -1.1690 | |
| 107 | Y | B | -0.0497 | |
| 108 | Y | B | 0.8160 | |
| 109 | D | B | 0.1245 | |
| 110 | Y | B | 0.1603 | |
| 111 | W | B | 0.1701 | |
| 112 | G | B | -0.3131 | |
| 113 | Q | B | -1.0059 | |
| 114 | G | B | 0.0000 | |
| 115 | T | B | 0.0000 | |
| 116 | Q | B | -1.1766 | |
| 117 | V | B | 0.0000 | |
| 118 | T | B | -0.3477 | |
| 119 | V | B | 0.0000 | |
| 120 | S | B | -0.8784 | |
| -2 | S | C | -0.7437 | |
| -1 | S | C | -0.8393 | |
| 0 | S | C | -1.2009 | |
| 1 | Q | C | -1.7447 | |
| 2 | V | C | 0.0000 | |
| 3 | Q | C | -1.3025 | |
| 4 | L | C | 0.0000 | |
| 5 | V | C | 1.2122 | |
| 6 | E | C | 0.0000 | |
| 7 | S | C | -0.5687 | |
| 8 | G | C | -1.1954 | |
| 9 | G | C | -1.1444 | |
| 10 | G | C | -0.9296 | |
| 11 | S | C | -0.7023 | |
| 12 | V | C | -0.7827 | |
| 13 | Q | C | -1.6428 | |
| 14 | A | C | -1.7877 | |
| 15 | G | C | -1.4624 | |
| 16 | G | C | -1.1548 | |
| 17 | S | C | -1.3589 | |
| 18 | L | C | -1.1256 | |
| 19 | R | C | -2.0947 | |
| 20 | L | C | 0.0000 | |
| 21 | S | C | -0.3087 | |
| 22 | C | C | 0.0000 | |
| 23 | A | C | -0.1976 | |
| 24 | A | C | -0.3959 | |
| 25 | S | C | -0.8608 | |
| 26 | G | C | -1.1499 | |
| 27 | S | C | -0.6612 | |
| 28 | I | C | -0.3468 | |
| 29 | S | C | -0.0108 | |
| 30 | S | C | -0.3367 | |
| 31 | I | C | 0.0000 | |
| 32 | T | C | 0.0000 | |
| 33 | Y | C | 0.0000 | |
| 34 | L | C | 0.0000 | |
| 35 | G | C | 0.0000 | |
| 36 | W | C | 0.0000 | |
| 37 | F | C | 0.0000 | |
| 38 | R | C | 0.0000 | |
| 39 | Q | C | -2.0939 | |
| 40 | A | C | -1.9660 | |
| 41 | P | C | -1.5538 | |
| 42 | G | C | -1.9258 | |
| 43 | K | C | -3.3161 | |
| 44 | E | C | -3.4951 | |
| 45 | R | C | -2.6305 | |
| 46 | E | C | -2.5837 | |
| 47 | G | C | -1.1928 | |
| 48 | V | C | 0.0000 | |
| 49 | A | C | 0.0000 | |
| 50 | A | C | 0.0000 | |
| 51 | L | C | 0.0000 | |
| 52 | I | C | 0.0000 | |
| 53 | T | C | -0.0846 | |
| 54 | V | C | 0.3620 | |
| 55 | N | C | -0.6181 | |
| 56 | G | C | -0.6044 | |
| 57 | H | C | -0.6830 | |
| 58 | T | C | -0.2367 | |
| 59 | Y | C | -0.2406 | |
| 60 | Y | C | -0.8505 | |
| 61 | A | C | -1.4999 | |
| 62 | D | C | -2.5191 | |
| 63 | S | C | -1.7934 | |
| 64 | V | C | 0.0000 | |
| 65 | K | C | -2.6635 | |
| 66 | G | C | -1.8624 | |
| 67 | R | C | -1.7048 | |
| 68 | F | C | 0.0000 | |
| 69 | T | C | -0.8945 | |
| 70 | V | C | 0.0000 | |
| 71 | S | C | -0.0761 | |
| 72 | L | C | -0.3035 | |
| 73 | D | C | -1.4187 | |
| 74 | N | C | -2.0268 | |
| 75 | A | C | -1.6172 | |
| 76 | K | C | -2.4292 | |
| 77 | N | C | -1.8525 | |
| 78 | T | C | 0.0000 | |
| 79 | V | C | 0.0000 | |
| 80 | Y | C | 0.0000 | |
| 81 | L | C | 0.0000 | |
| 82 | Q | C | -1.3687 | |
| 83 | M | C | 0.0000 | |
| 84 | N | C | -1.7022 | |
| 85 | S | C | -1.4390 | |
| 86 | L | C | 0.0000 | |
| 87 | K | C | -2.6870 | |
| 88 | P | C | -2.0745 | |
| 89 | E | C | -2.4593 | |
| 90 | D | C | 0.0000 | |
| 91 | T | C | -1.2031 | |
| 92 | A | C | 0.0000 | |
| 93 | L | C | -0.4098 | |
| 94 | Y | C | 0.0000 | |
| 95 | Y | C | -0.2189 | |
| 96 | C | C | 0.0000 | |
| 97 | A | C | 0.0000 | |
| 98 | A | C | 0.0000 | |
| 99 | A | C | 0.0000 | |
| 100 | A | C | 0.2820 | |
| 101 | W | C | 0.2573 | |
| 102 | G | C | 0.0000 | |
| 103 | Y | C | 0.0000 | |
| 104 | A | C | 0.0000 | |
| 105 | W | C | -0.0175 | |
| 106 | P | C | -0.5852 | |
| 107 | L | C | 0.0000 | |
| 108 | H | C | -1.6350 | |
| 109 | Q | C | -1.9138 | |
| 110 | D | C | -1.9824 | |
| 111 | D | C | -0.7603 | |
| 112 | Y | C | 0.7200 | |
| 113 | W | C | 0.0000 | |
| 114 | Y | C | 0.1197 | |
| 115 | W | C | 0.3171 | |
| 116 | G | C | -0.1262 | |
| 117 | Q | C | -0.8228 | |
| 118 | G | C | -0.5527 | |
| 119 | T | C | -0.7255 | |
| 120 | Q | C | -1.2962 | |
| 121 | V | C | 0.0000 | |
| 122 | T | C | -1.0456 | |
| 123 | V | C | 0.0000 | |
| 124 | S | C | -1.2627 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine