| Chain sequence(s) |
A: MQVQLVEKGGKRVQPGGSLRLKCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFKIKRDDARNTVYLRMRKLKPEDTAVYYCNVNVGFEYWGQGTRVTVSKK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:38)
[INFO] Main: Simulation completed successfully. (00:02:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.3307 | |
| 2 | Q | A | -0.9349 | |
| 3 | V | A | -0.3705 | |
| 4 | Q | A | -0.8911 | |
| 5 | L | A | 0.0000 | |
| 6 | V | A | 0.3989 | |
| 7 | E | A | 0.0000 | |
| 8 | K | A | -2.6411 | |
| 9 | G | A | -2.7524 | |
| 10 | G | A | -2.9986 | |
| 11 | K | A | -3.5821 | |
| 12 | R | A | -3.5502 | |
| 13 | V | A | -2.3542 | |
| 14 | Q | A | -2.6333 | |
| 15 | P | A | -2.5920 | |
| 16 | G | A | -1.9521 | |
| 17 | G | A | -1.8584 | |
| 18 | S | A | -2.0022 | |
| 19 | L | A | 0.0000 | |
| 20 | R | A | -2.9022 | |
| 21 | L | A | 0.0000 | |
| 22 | K | A | -1.7057 | |
| 23 | C | A | 0.0000 | |
| 24 | A | A | -0.5045 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -0.4141 | |
| 27 | G | A | -0.4381 | |
| 28 | F | A | 0.0000 | |
| 29 | P | A | -1.5508 | |
| 30 | V | A | 0.0000 | |
| 31 | N | A | -2.3629 | |
| 32 | R | A | -2.3737 | |
| 33 | Y | A | -1.2697 | |
| 34 | S | A | -1.1273 | |
| 35 | M | A | 0.0000 | |
| 36 | R | A | -0.7242 | |
| 37 | W | A | 0.0000 | |
| 38 | Y | A | -0.9358 | |
| 39 | R | A | -1.6282 | |
| 40 | Q | A | -2.3805 | |
| 41 | A | A | -2.2181 | |
| 42 | P | A | -1.4011 | |
| 43 | G | A | -1.9315 | |
| 44 | K | A | -3.4581 | |
| 45 | E | A | -3.6658 | |
| 46 | R | A | -2.9148 | |
| 47 | E | A | -2.9010 | |
| 48 | W | A | -1.2560 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | G | A | 0.0000 | |
| 52 | M | A | 0.0000 | |
| 53 | S | A | -1.6491 | |
| 54 | S | A | -1.5764 | |
| 55 | A | A | -1.5962 | |
| 56 | G | A | -2.4826 | |
| 57 | D | A | -2.8305 | |
| 58 | R | A | -2.9268 | |
| 59 | S | A | -2.0234 | |
| 60 | S | A | -1.4230 | |
| 61 | Y | A | -1.5841 | |
| 62 | E | A | -2.1816 | |
| 63 | D | A | -2.8139 | |
| 64 | S | A | -2.0436 | |
| 65 | V | A | 0.0000 | |
| 66 | K | A | -3.0436 | |
| 67 | G | A | -2.4233 | |
| 68 | R | A | -2.6206 | |
| 69 | F | A | 0.0000 | |
| 70 | K | A | -2.7002 | |
| 71 | I | A | 0.0000 | |
| 72 | K | A | -2.0787 | |
| 73 | R | A | -1.9050 | |
| 74 | D | A | -2.2481 | |
| 75 | D | A | -3.2185 | |
| 76 | A | A | -2.0256 | |
| 77 | R | A | -2.6362 | |
| 78 | N | A | -2.1342 | |
| 79 | T | A | 0.0000 | |
| 80 | V | A | 0.0000 | |
| 81 | Y | A | 0.0000 | |
| 82 | L | A | 0.0000 | |
| 83 | R | A | -2.3985 | |
| 84 | M | A | 0.0000 | |
| 85 | R | A | -3.3839 | |
| 86 | K | A | -3.1751 | |
| 87 | L | A | 0.0000 | |
| 88 | K | A | -2.8737 | |
| 89 | P | A | -2.0879 | |
| 90 | E | A | -2.3821 | |
| 91 | D | A | 0.0000 | |
| 92 | T | A | -1.6641 | |
| 93 | A | A | 0.0000 | |
| 94 | V | A | -0.7714 | |
| 95 | Y | A | 0.0000 | |
| 96 | Y | A | -0.6471 | |
| 97 | C | A | 0.0000 | |
| 98 | N | A | 0.0000 | |
| 99 | V | A | 0.0000 | |
| 100 | N | A | -1.2336 | |
| 101 | V | A | -0.4026 | |
| 102 | G | A | -0.1134 | |
| 103 | F | A | 0.6236 | |
| 104 | E | A | -1.1450 | |
| 105 | Y | A | -0.5145 | |
| 106 | W | A | -0.1563 | |
| 107 | G | A | -0.1005 | |
| 108 | Q | A | -1.2005 | |
| 109 | G | A | -0.9438 | |
| 110 | T | A | -1.8287 | |
| 111 | R | A | -2.9134 | |
| 112 | V | A | 0.0000 | |
| 113 | T | A | 0.0000 | |
| 114 | V | A | 0.0000 | |
| 115 | S | A | -2.4349 | |
| 116 | K | A | -3.0406 | |
| 117 | K | A | -2.9187 |