Project name: query_structure

Status: done

Started: 2026-03-17 00:13:51
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Chain sequence(s) A: MQVQLVEKGGKRVQPGGSLRLKCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFKIKRDDARNTVYLRMRKLKPEDTAVYYCNVNVGFEYWGQGTRVTVSKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:39)
Show buried residues

Minimal score value
-3.6658
Maximal score value
0.6236
Average score
-1.3703
Total score value
-160.3195

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3307
2 Q A -0.9349
3 V A -0.3705
4 Q A -0.8911
5 L A 0.0000
6 V A 0.3989
7 E A 0.0000
8 K A -2.6411
9 G A -2.7524
10 G A -2.9986
11 K A -3.5821
12 R A -3.5502
13 V A -2.3542
14 Q A -2.6333
15 P A -2.5920
16 G A -1.9521
17 G A -1.8584
18 S A -2.0022
19 L A 0.0000
20 R A -2.9022
21 L A 0.0000
22 K A -1.7057
23 C A 0.0000
24 A A -0.5045
25 A A 0.0000
26 S A -0.4141
27 G A -0.4381
28 F A 0.0000
29 P A -1.5508
30 V A 0.0000
31 N A -2.3629
32 R A -2.3737
33 Y A -1.2697
34 S A -1.1273
35 M A 0.0000
36 R A -0.7242
37 W A 0.0000
38 Y A -0.9358
39 R A -1.6282
40 Q A -2.3805
41 A A -2.2181
42 P A -1.4011
43 G A -1.9315
44 K A -3.4581
45 E A -3.6658
46 R A -2.9148
47 E A -2.9010
48 W A -1.2560
49 V A 0.0000
50 A A 0.0000
51 G A 0.0000
52 M A 0.0000
53 S A -1.6491
54 S A -1.5764
55 A A -1.5962
56 G A -2.4826
57 D A -2.8305
58 R A -2.9268
59 S A -2.0234
60 S A -1.4230
61 Y A -1.5841
62 E A -2.1816
63 D A -2.8139
64 S A -2.0436
65 V A 0.0000
66 K A -3.0436
67 G A -2.4233
68 R A -2.6206
69 F A 0.0000
70 K A -2.7002
71 I A 0.0000
72 K A -2.0787
73 R A -1.9050
74 D A -2.2481
75 D A -3.2185
76 A A -2.0256
77 R A -2.6362
78 N A -2.1342
79 T A 0.0000
80 V A 0.0000
81 Y A 0.0000
82 L A 0.0000
83 R A -2.3985
84 M A 0.0000
85 R A -3.3839
86 K A -3.1751
87 L A 0.0000
88 K A -2.8737
89 P A -2.0879
90 E A -2.3821
91 D A 0.0000
92 T A -1.6641
93 A A 0.0000
94 V A -0.7714
95 Y A 0.0000
96 Y A -0.6471
97 C A 0.0000
98 N A 0.0000
99 V A 0.0000
100 N A -1.2336
101 V A -0.4026
102 G A -0.1134
103 F A 0.6236
104 E A -1.1450
105 Y A -0.5145
106 W A -0.1563
107 G A -0.1005
108 Q A -1.2005
109 G A -0.9438
110 T A -1.8287
111 R A -2.9134
112 V A 0.0000
113 T A 0.0000
114 V A 0.0000
115 S A -2.4349
116 K A -3.0406
117 K A -2.9187
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Laboratory of Theory of Biopolymers 2018