CABS-dock: 13e824e81c6e89c

Project name: 13e824e81c6e89c

Status: done

submitted: 2026-06-17 06:48:35, status changed: 2026-06-17 14:13:41

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	KRLVQVFGSNTYRLHHHHHHHHHHH
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECCCCCEECCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.4711	5.82177	24.199	125
cluster_2.pdb ( medoid)	15.4274	9.13958	38.4758	141
cluster_3.pdb ( medoid)	13.0711	6.65588	28.5864	87
cluster_4.pdb ( medoid)	11.8427	9.87947	28.1103	117
cluster_5.pdb ( medoid)	6.78953	15.3177	34.5854	104
cluster_6.pdb ( medoid)	6.72607	15.6109	31.7591	105
cluster_7.pdb ( medoid)	6.0113	15.9699	32.4179	96
cluster_8.pdb ( medoid)	5.56444	17.0727	38.2311	95
cluster_9.pdb ( medoid)	5.18406	10.2236	23.9221	53
cluster_10.pdb ( medoid)	4.79465	16.0596	33.424	77