CABS-dock: 161270574887d67

Project name: 161270574887d67

Status: done

submitted: 2026-03-15 13:53:16, status changed: 2026-03-15 20:36:18

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	IKIWFQNRRMKWGGVQVFGSNTY
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECCCCCCCCEEEECCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.6206	6.8741	40.2316	128
cluster_2.pdb ( medoid)	15.7801	9.75916	36.559	154
cluster_3.pdb ( medoid)	13.2903	8.1262	23.5813	108
cluster_4.pdb ( medoid)	12.4553	9.1527	26.8181	114
cluster_5.pdb ( medoid)	7.62576	17.8343	43.5561	136
cluster_6.pdb ( medoid)	6.89801	16.3815	36.615	113
cluster_7.pdb ( medoid)	5.94812	14.2902	40.3432	85
cluster_8.pdb ( medoid)	5.78581	11.5801	28.5616	67
cluster_9.pdb ( medoid)	5.19859	7.50203	23.0256	39
cluster_10.pdb ( medoid)	4.68577	11.9511	29.2635	56