CABS-dock: 19d4b49990573b7

Project name: 19d4b49990573b7

Status: done

submitted: 2026-07-23 05:46:52, status changed: 2026-07-23 10:20:13

Project settings

Protein sequence(s)	LYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKK input pdb
Peptide sequence	TTDHISAAGPW
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.3873	5.63275	33.5359	143
cluster_2.pdb ( medoid)	19.8175	9.18378	30.0255	182
cluster_3.pdb ( medoid)	13.1904	12.8123	34.8294	169
cluster_4.pdb ( medoid)	11.5959	9.83109	21.0096	114
cluster_5.pdb ( medoid)	11.4817	7.6644	30.8169	88
cluster_6.pdb ( medoid)	10.8381	7.47366	29.749	81
cluster_7.pdb ( medoid)	6.12075	12.09	30.4706	74
cluster_8.pdb ( medoid)	3.34942	12.2409	29.2092	41
cluster_9.pdb ( medoid)	3.22553	14.8813	31.841	48
cluster_10.pdb ( medoid)	2.81053	21.3483	46.1915	60