CABS-dock: 7NUI_YTAVSS

Project name: 7NUI_YTAVSS_E2

Status: done

submitted: 2026-05-30 16:04:14, status changed: 2026-05-31 15:12:50

Project settings

Protein sequence(s)	GSHSMRYFDTAMSRPGRGEPRFISSVGYVDDTQFVRFDSDAASPRMEPRAPWIEQEGPEYWDRNTQIFKTNTQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP input pdb
Peptide sequence	YTAVSSTWHWTGHNVKH
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.9984	3.27513	12.417	131
cluster_2.pdb ( medoid)	38.5334	3.97058	10.4486	153
cluster_3.pdb ( medoid)	19.204	2.6557	10.9629	51
cluster_4.pdb ( medoid)	18.9147	6.87298	18.9682	130
cluster_5.pdb ( medoid)	17.8658	6.60479	18.4596	118
cluster_6.pdb ( medoid)	12.5376	3.58921	10.6548	45
cluster_7.pdb ( medoid)	12.0916	6.20265	12.7276	75
cluster_8.pdb ( medoid)	11.8556	11.134	23.6692	132
cluster_9.pdb ( medoid)	11.2819	12.4979	32.1661	141
cluster_10.pdb ( medoid)	1.70434	14.0817	32.7555	24