CABS-dock: MBTD1_YY1_repo_fasta

Project name: MBTD1_YY1_repo_fasta _v1

Status: done

submitted: 2026-07-13 20:20:25, status changed: 2026-07-14 16:31:18

Project settings

Protein sequence(s)	AVSMEGFSWGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRFKRSDDGHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPAS input pdb
Peptide sequence	DPGNKKWEQKQVQIKTLEGEFSVTMWSSDE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEEEEEEEEECCEEEEEEEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	63.3601	1.12058	2.09353	71
cluster_2.pdb ( medoid)	19.3626	5.57777	23.7305	108
cluster_3.pdb ( medoid)	13.7866	7.90621	60.8594	109
cluster_4.pdb ( medoid)	10.1235	3.06219	20.6252	31
cluster_5.pdb ( medoid)	8.34663	10.663	56.165	89
cluster_6.pdb ( medoid)	7.91638	14.2742	48.2065	113
cluster_7.pdb ( medoid)	7.51672	12.5055	26.0889	94
cluster_8.pdb ( medoid)	7.19449	14.0385	54.0254	101
cluster_9.pdb ( medoid)	6.52288	18.7034	66.5569	122
cluster_10.pdb ( medoid)	2.48063	16.1249	36.6557	40