CABS-dock: 27924e124579a1c

Project name: 27924e124579a1c

Status: done

submitted: 2025-08-01 13:18:42, status changed: 2025-08-01 19:46:06

Project settings

Protein sequence(s)	MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYKGDYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTV input pdb
Peptide sequence	KSPLY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.6972	3.58571	25.4811	128
cluster_2.pdb ( medoid)	19.5416	6.34543	35.9571	124
cluster_3.pdb ( medoid)	19.1067	6.64687	26.0044	127
cluster_4.pdb ( medoid)	17.4891	7.83344	33.7027	137
cluster_5.pdb ( medoid)	14.0307	6.62831	30.0054	93
cluster_6.pdb ( medoid)	13.1679	9.72064	47.6538	128
cluster_7.pdb ( medoid)	11.6814	5.82124	21.1865	68
cluster_8.pdb ( medoid)	10.0154	6.29031	31.5723	63
cluster_9.pdb ( medoid)	8.2366	9.34851	28.5604	77
cluster_10.pdb ( medoid)	3.72305	14.7728	45.4452	55