CABS-dock: 2dx4

Project name: 2dx4

Status: done

submitted: 2025-12-12 14:28:44, status changed: 2025-12-12 16:02:23

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	INYWLAHAKAGYIVHWTA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	36.5807	2.92504	19.172	107
cluster_2.pdb ( medoid)	23.2214	5.89973	26.1825	137
cluster_3.pdb ( medoid)	20.9455	4.96527	32.3561	104
cluster_4.pdb ( medoid)	16.4373	8.88226	25.5454	146
cluster_5.pdb ( medoid)	13.4057	10.145	23.0294	136
cluster_6.pdb ( medoid)	8.66944	10.3813	24.2759	90
cluster_7.pdb ( medoid)	7.55395	10.8553	24.9879	82
cluster_8.pdb ( medoid)	7.0341	7.39256	15.8918	52
cluster_9.pdb ( medoid)	6.4948	12.0096	22.6591	78
cluster_10.pdb ( medoid)	4.81694	14.1169	30.8213	68