CABS-dock: LepB_3F

Project name: LepB_3F_3

Status: done

submitted: 2026-06-03 03:10:01, status changed: 2026-06-03 09:44:41

Project settings

Protein sequence(s)	RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDGLRLSRIGGIH input pdb
Peptide sequence	MLSFAADFFFEGDD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.9662	4.5412	16.11	127
cluster_2.pdb ( medoid)	16.7352	9.20218	30.844	154
cluster_3.pdb ( medoid)	16.3656	9.65439	46.1668	158
cluster_4.pdb ( medoid)	13.7143	7.29168	17.9112	100
cluster_5.pdb ( medoid)	13.2375	10.2739	44.1932	136
cluster_6.pdb ( medoid)	11.3459	6.08149	15.7371	69
cluster_7.pdb ( medoid)	8.64425	10.5272	39.242	91
cluster_8.pdb ( medoid)	3.75636	13.577	34.1267	51
cluster_9.pdb ( medoid)	3.75077	16.53	62.3154	62
cluster_10.pdb ( medoid)	2.78993	18.6384	47.3537	52