CABS-dock: 2ffcae5267c9eda

Project name: 2ffcae5267c9eda

Status: done

submitted: 2026-04-02 12:35:12, status changed: 2026-04-02 14:36:00

Project settings

Protein sequence(s)	MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA input pdb
Peptide sequence	IGASWPDHATT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.3375	7.51926	19.4212	183
cluster_2.pdb ( medoid)	20.3088	6.89357	18.5935	140
cluster_3.pdb ( medoid)	19.0373	2.57389	12.2886	49
cluster_4.pdb ( medoid)	16.6116	7.16368	18.0905	119
cluster_5.pdb ( medoid)	15.0764	6.69922	21.4683	101
cluster_6.pdb ( medoid)	12.1819	8.78352	23.7108	107
cluster_7.pdb ( medoid)	12.1685	5.58819	27.8117	68
cluster_8.pdb ( medoid)	8.82388	8.83965	19.5186	78
cluster_9.pdb ( medoid)	8.72433	9.74286	31.0383	85
cluster_10.pdb ( medoid)	7.34814	9.52622	20.2367	70