CABS-dock: 305ea63fdf1290b

Project name: 305ea63fdf1290b

Status: done

submitted: 2025-10-20 17:22:40, status changed: 2025-10-20 20:47:57

Project settings

Protein sequence(s)	DLTVEKAADVTWEEEEAEQTGVSHNLMITVDDDGTMRIKDGGSGVLWDVPSPAELEEGVYRIKQQGIFGKTQVGVGVQKEGVFHTMWHVTRGAVLTHNGKRLEPNWASVKKDLISYGGGWRLSAQWQKGEEVQVIAVEPGKNPKNFQTMPGTFQTTTGEIGAIALDFKPGTSGSPIINREGKVVGLYGNGVVTKNGGYVSGIAQTNAE input pdb
Peptide sequence	GRRSIALD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.6918	2.969	20.6214	103
cluster_2.pdb ( medoid)	24.8476	8.81371	34.981	219
cluster_3.pdb ( medoid)	23.1664	4.27343	30.3367	99
cluster_4.pdb ( medoid)	16.9799	5.12372	17.1937	87
cluster_5.pdb ( medoid)	16.5673	6.57921	28.9519	109
cluster_6.pdb ( medoid)	13.296	10.2287	32.6121	136
cluster_7.pdb ( medoid)	12.76	6.50472	25.1425	83
cluster_8.pdb ( medoid)	6.20398	5.31916	14.3459	33
cluster_9.pdb ( medoid)	5.0148	14.9557	29.8892	75
cluster_10.pdb ( medoid)	3.42611	16.3451	38.318	56