CABS-dock: 39ff6d50809f855

Project name: 39ff6d50809f855

Status: done

submitted: 2026-06-13 08:52:12, status changed: 2026-06-13 11:33:18

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	KRLVQVFGSNTYRLHHHHHHHHHHH
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECCCCCEECCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.7143	3.9005	29.8337	112
cluster_2.pdb ( medoid)	20.4634	4.59358	22.105	94
cluster_3.pdb ( medoid)	20.3382	7.86696	31.3731	160
cluster_4.pdb ( medoid)	19.4957	6.36037	21.3363	124
cluster_5.pdb ( medoid)	13.9193	8.69299	24.339	121
cluster_6.pdb ( medoid)	11.6667	12.1714	31.7535	142
cluster_7.pdb ( medoid)	8.01178	10.2349	23.2458	82
cluster_8.pdb ( medoid)	7.99331	7.63138	18.0938	61
cluster_9.pdb ( medoid)	7.55459	5.55953	16.9719	42
cluster_10.pdb ( medoid)	4.96601	12.4849	24.6187	62