CABS-dock: 3bc5def45453c7

Project name: 3bc5def45453c7

Status: done

submitted: 2026-03-13 11:33:25, status changed: 2026-03-13 18:14:42

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	RRRWKKVQLFGSNDA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.2778	5.40471	34.0144	115
cluster_2.pdb ( medoid)	16.545	8.28043	39.3631	137
cluster_3.pdb ( medoid)	15.0449	9.3055	32.8004	140
cluster_4.pdb ( medoid)	14.4551	7.8173	31.6075	113
cluster_5.pdb ( medoid)	10.3358	9.38489	26.5153	97
cluster_6.pdb ( medoid)	7.10591	12.5248	29.8489	89
cluster_7.pdb ( medoid)	5.65685	15.2028	37.6215	86
cluster_8.pdb ( medoid)	5.41408	15.6998	40.7708	85
cluster_9.pdb ( medoid)	4.56751	16.6393	40.0534	76
cluster_10.pdb ( medoid)	4.08534	15.1762	46.0186	62