CABS-dock: 3c3332643d6c74c

Project name: 3c3332643d6c74c

Status: done

submitted: 2026-03-09 15:27:07, status changed: 2026-03-09 19:07:23

Project settings

Protein sequence(s)	GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK input pdb
Peptide sequence	IKLSPETKDNL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.3959	4.77767	26.3199	107
cluster_2.pdb ( medoid)	20.2118	6.97613	31.7236	141
cluster_3.pdb ( medoid)	18.82	6.32307	29.5693	119
cluster_4.pdb ( medoid)	18.8179	8.66196	27.8941	163
cluster_5.pdb ( medoid)	12.5506	8.76453	24.0877	110
cluster_6.pdb ( medoid)	10.5235	9.59759	28.3056	101
cluster_7.pdb ( medoid)	10.4357	7.95345	16.3706	83
cluster_8.pdb ( medoid)	7.6394	9.55573	26.5536	73
cluster_9.pdb ( medoid)	7.48552	9.48498	19.0335	71
cluster_10.pdb ( medoid)	2.18001	14.6789	27.8348	32