CABS-dock: TPT5hlj@

Project name: TPT5hlj@

Status: done

submitted: 2025-07-08 11:58:08, status changed: 2025-07-08 16:09:04

Project settings

Protein sequence(s)	DAYPVESEIINLTINGVARGNHFNFVNGTLQTRNYGKVYVAGQGTSDSELVKKKGDIILTSLLGDGDHTLNVNKAESKELELYARVYNNTKRDITVDSVSLSPGLNATGREFSANKFVLYFKPTVLKKNRINTLVFGATFDEDIDDTNRHYLLSMRFSPGNDLFKVGEK input pdb
Peptide sequence	TPTYIAPSSLKA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.2124	4.43067	23.9646	125
cluster_2.pdb ( medoid)	25.9231	4.59049	12.7437	119
cluster_3.pdb ( medoid)	25.0599	4.94813	33.3675	124
cluster_4.pdb ( medoid)	14.6549	6.55071	24.5295	96
cluster_5.pdb ( medoid)	10.5151	10.5562	34.031	111
cluster_6.pdb ( medoid)	9.66981	12.8234	27.0144	124
cluster_7.pdb ( medoid)	8.43179	8.77631	25.5111	74
cluster_8.pdb ( medoid)	7.90183	10.2508	24.8693	81
cluster_9.pdb ( medoid)	6.87759	13.5222	33.2192	93
cluster_10.pdb ( medoid)	4.17089	12.7071	32.9429	53