CABS-dock: 43cc619c7774a5d

Project name: 43cc619c7774a5d

Status: done

submitted: 2026-04-14 06:21:17, status changed: 2026-04-14 14:03:09

Project settings

Protein sequence(s)	GTNVNDKVTASNFKLEKTTFDPNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGDVDYSNSNNTMPIADIKSTNGDVVAKATYDILTKTYTFVFTDYVNNKENINGQFSLPLFTDRAKAPKSGTYDANINIADEMFNNKITYNYSSPIAGIDKPNGANISSQIIGVDTASGQNTYKQTVFVNPKQRVLGNTWVYIKGYQDKIEESSGKVSATDTKLRIFEVNDTSKLSESYYADPNDSNLKEVTDQFKNRIYYEHPNVASIKFGDITKTYVVLVEGHYDNTGKNLKTQVIQENVDPVTNRDYSIFGWNNENNVVVV input pdb
Peptide sequence	VVIPIELR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.8291	4.83754	14.3009	183
cluster_2.pdb ( medoid)	33.0839	2.62968	9.84785	87
cluster_3.pdb ( medoid)	32.2647	2.57247	8.85495	83
cluster_4.pdb ( medoid)	29.862	6.53005	21.7312	195
cluster_5.pdb ( medoid)	24.7834	4.43845	32.2399	110
cluster_6.pdb ( medoid)	16.6292	4.14933	9.88109	69
cluster_7.pdb ( medoid)	12.8632	6.608	29.1151	85
cluster_8.pdb ( medoid)	10.823	6.92968	15.0987	75
cluster_9.pdb ( medoid)	10.2902	5.63641	31.628	58
cluster_10.pdb ( medoid)	7.60716	7.23003	25.2288	55