CABS-dock: 44f2a774ceba233

Project name: 44f2a774ceba233

Status: done

submitted: 2026-04-10 04:21:48, status changed: 2026-04-10 06:29:25

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	RRRVQLYPGSNDARRRH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.6459	8.52735	30.7281	159
cluster_2.pdb ( medoid)	15.4843	8.00809	31.7236	124
cluster_3.pdb ( medoid)	9.3171	11.3769	27.7471	106
cluster_4.pdb ( medoid)	9.11051	10.8666	28.5619	99
cluster_5.pdb ( medoid)	8.65557	13.0552	36.9639	113
cluster_6.pdb ( medoid)	7.48949	12.2839	28.5779	92
cluster_7.pdb ( medoid)	7.33989	13.4879	28.423	99
cluster_8.pdb ( medoid)	5.93475	11.9634	35.6334	71
cluster_9.pdb ( medoid)	5.37633	11.904	27.6691	64
cluster_10.pdb ( medoid)	4.55671	16.0203	33.5248	73