CABS-dock: 51e7c6646fea919

Project name: 51e7c6646fea919

Status: done

submitted: 2026-01-21 11:07:58, status changed: 2026-01-21 13:27:31

Project settings

Protein sequence(s)	GTVFTTVEDLLGSKILLTCSLDDSTEVTGHRWLKGGVVLKEDALPGQKTEFKVDSSDDQWGEYSCVFLPEPMGTANIQLHG input pdb
Peptide sequence	TRSMTSEGLRSSGAMAG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.5938	5.16391	25.215	127
cluster_2.pdb ( medoid)	21.8216	6.41567	18.5805	140
cluster_3.pdb ( medoid)	18.1196	7.34013	22.7222	133
cluster_4.pdb ( medoid)	15.0128	11.1905	30.4696	168
cluster_5.pdb ( medoid)	14.1359	6.01304	16.267	85
cluster_6.pdb ( medoid)	13.698	7.08135	16.2692	97
cluster_7.pdb ( medoid)	6.71234	11.6204	24.1687	78
cluster_8.pdb ( medoid)	5.19107	13.4847	29.3799	70
cluster_9.pdb ( medoid)	4.79103	9.18384	21.0298	44
cluster_10.pdb ( medoid)	4.47338	12.9656	25.6805	58