CABS-dock: 52200740b7af145

Project name: 52200740b7af145

Status: done

submitted: 2026-07-13 12:34:05, status changed: 2026-07-13 22:15:18

Project settings

Protein sequence(s)	MDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAAGMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLLGRGISELDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIG input pdb
Peptide sequence	RPLNFKMLRFWGQQQCRRPLYCRRR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHEEECCCCCCCCCCEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.9688	3.02065	9.47326	160
cluster_2.pdb ( medoid)	21.8907	6.62382	14.2318	145
cluster_3.pdb ( medoid)	20.09	5.42559	25.6149	109
cluster_4.pdb ( medoid)	16.984	6.59446	21.5673	112
cluster_5.pdb ( medoid)	15.2106	7.23182	30.5062	110
cluster_6.pdb ( medoid)	11.4485	9.43353	21.5621	108
cluster_7.pdb ( medoid)	7.35384	14.0063	40.3358	103
cluster_8.pdb ( medoid)	6.66724	5.54953	10.6791	37
cluster_9.pdb ( medoid)	3.39004	23.0086	40.9689	78
cluster_10.pdb ( medoid)	2.66106	14.28	43.9516	38