CABS-dock: CRVTARR06

Project name: CRVTARR06

Status: done

submitted: 2026-07-15 03:39:34, status changed: 2026-07-15 05:20:44

Project settings

Protein sequence(s)	AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA input pdb
Peptide sequence	CRVTARR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.9735	4.06475	17.1451	195
cluster_2.pdb ( medoid)	31.8688	2.66718	7.6129	85
cluster_3.pdb ( medoid)	29.5355	4.36762	14.6942	129
cluster_4.pdb ( medoid)	24.5974	5.12249	15.4475	126
cluster_5.pdb ( medoid)	19.297	6.47769	26.5812	125
cluster_6.pdb ( medoid)	15.3041	10.2587	39.6927	157
cluster_7.pdb ( medoid)	8.74539	5.7173	27.9511	50
cluster_8.pdb ( medoid)	6.90822	8.54055	25.7554	59
cluster_9.pdb ( medoid)	3.18548	14.7544	34.0705	47
cluster_10.pdb ( medoid)	2.23683	12.0706	31.6772	27