CABS-dock: 5978645b836dd86

Project name: 5978645b836dd86

Status: done

submitted: 2026-01-22 13:26:30, status changed: 2026-01-22 15:14:33

Project settings

Protein sequence(s)	GTVFTTVEDLLGSKILLTCSLDDSTEVTGHRWLKGGVVLKEDALPGQKTEFKVDSSDDQWGEYSCVFLPEPMGTANIQLHG input pdb
Peptide sequence	AAREEVPGRRGYPGY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.9402	8.78691	20.9824	184
cluster_2.pdb ( medoid)	19.6516	5.75017	19.852	113
cluster_3.pdb ( medoid)	18.8259	7.91462	29.1162	149
cluster_4.pdb ( medoid)	16.0918	10.1294	25.2479	163
cluster_5.pdb ( medoid)	15.4623	5.62659	17.8666	87
cluster_6.pdb ( medoid)	11.0118	9.08113	20.6852	100
cluster_7.pdb ( medoid)	10.4236	7.57895	24.5766	79
cluster_8.pdb ( medoid)	4.43776	10.3656	23.3836	46
cluster_9.pdb ( medoid)	4.22553	10.4129	25.1243	44
cluster_10.pdb ( medoid)	3.38395	10.3429	24.5401	35