CABS-dock: 599d90ede31a047

Project name: 599d90ede31a047

Status: done

submitted: 2026-01-20 05:54:30, status changed: 2026-01-20 08:57:26

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPANPVTGRPLVNIYNCSGVQVGDNNYLTMQQTMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	RVIFVQVGSNCR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEEECCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.7672	8.6433	38.0043	240
cluster_2.pdb ( medoid)	16.7491	6.08987	18.1205	102
cluster_3.pdb ( medoid)	15.2865	10.1397	40.9995	155
cluster_4.pdb ( medoid)	15.2148	7.62414	21.2352	116
cluster_5.pdb ( medoid)	13.9864	8.72278	32.6469	122
cluster_6.pdb ( medoid)	5.40416	14.9885	37.2969	81
cluster_7.pdb ( medoid)	4.28473	13.3031	27.8441	57
cluster_8.pdb ( medoid)	3.25983	14.7247	33.8251	48
cluster_9.pdb ( medoid)	3.08119	14.6048	36.8017	45
cluster_10.pdb ( medoid)	1.82718	18.6079	41.2878	34