CABS-dock: FSSIFSFLAF-6T7Z

Project name: FSSIFSFLAF-6T7Z

Status: done

submitted: 2025-04-22 01:54:10, status changed: 2025-04-22 06:43:28

Project settings

Protein sequence(s)	RLIYTAGGYFRQSLSYLEAYNPSDGTWLRRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVATATWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT input pdb
Peptide sequence	FSSIFSFLAF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.6759	4.56159	26.8176	108
cluster_2.pdb ( medoid)	14.9722	2.60482	11.3444	39
cluster_3.pdb ( medoid)	12.5777	8.03009	30.1757	101
cluster_4.pdb ( medoid)	11.9203	12.7514	30.4709	152
cluster_5.pdb ( medoid)	11.4606	15.4442	36.5298	177
cluster_6.pdb ( medoid)	11.3075	10.7893	36.3245	122
cluster_7.pdb ( medoid)	10.1519	5.91021	22.3222	60
cluster_8.pdb ( medoid)	9.58871	13.6619	37.0763	131
cluster_9.pdb ( medoid)	8.46311	9.80727	23.4898	83
cluster_10.pdb ( medoid)	6.94855	3.8857	22.3671	27