CABS-dock: CD44_RHOA

Project name: CD44_RHOA_cytotail

Status: done

submitted: 2026-06-10 14:44:48, status changed: 2026-06-10 17:35:54

Project settings

Protein sequence(s)	IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA input pdb
Peptide sequence	NSRRRCGQKKKLVINSGNGAVEDRKPSGLN
Simulation mc cycles	20
Peptide secondary structure psipred	CCCCCCCCCCCEEEECCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	40.9874	3.48888	26.4309	143
cluster_2.pdb ( medoid)	20.4433	5.03832	30.5621	103
cluster_3.pdb ( medoid)	16.1098	10.863	35.499	175
cluster_4.pdb ( medoid)	16.1002	3.78878	6.81643	61
cluster_5.pdb ( medoid)	15.251	11.5403	34.725	176
cluster_6.pdb ( medoid)	11.2909	9.56521	28.4491	108
cluster_7.pdb ( medoid)	8.94855	11.7337	29.0873	105
cluster_8.pdb ( medoid)	6.77531	12.5456	28.2255	85
cluster_9.pdb ( medoid)	5.02298	5.3753	9.13708	27
cluster_10.pdb ( medoid)	1.34077	12.6793	21.5345	17