CABS-dock: 65db052fcddefef

Project name: 65db052fcddefef

Status: done

submitted: 2026-01-13 17:36:02, status changed: 2026-01-13 18:58:44

Project settings

Protein sequence(s)	ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVETFSDLWKLLPEN input pdb
Peptide sequence	MPLLKCWDCFCE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.5756	1.13226	8.99534	55
cluster_2.pdb ( medoid)	19.2404	8.31585	27.321	160
cluster_3.pdb ( medoid)	17.4279	15.3777	41.4016	268
cluster_4.pdb ( medoid)	13.2503	11.7733	37.8187	156
cluster_5.pdb ( medoid)	11.7271	4.43417	20.6968	52
cluster_6.pdb ( medoid)	10.2857	9.72223	38.0435	100
cluster_7.pdb ( medoid)	6.1968	10.812	27.2597	67
cluster_8.pdb ( medoid)	5.64994	12.9205	42.0125	73
cluster_9.pdb ( medoid)	4.26683	7.73408	19.5872	33
cluster_10.pdb ( medoid)	2.16642	16.6173	32.0884	36